Strain Fitness in Sinorhizobium meliloti 1021 around SMa0209

Experiment: Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa0204 and SMa0206 overlap by 4 nucleotidesSMa0206 and SMa0209 are separated by 124 nucleotidesSMa0209 and SMa0210 are separated by 94 nucleotidesSMa0210 and SMa0211 are separated by 142 nucleotidesSMa0211 and SMa0214 are separated by 217 nucleotides SMa0204: SMa0204 - sensor histidine kinase, at 112,578 to 113,825 SMa0204 SMa0206: SMa0206 - Response regulator, at 113,822 to 114,544 SMa0206 SMa0209: SMa0209 - hypothetical protein, at 114,669 to 115,757 SMa0209 SMa0210: SMa0210 - hypothetical protein, at 115,852 to 116,118 SMa0210 SMa0211: SMa0211 - hypothetical protein, at 116,261 to 116,455 SMa0211 SMa0214: SMa0214 - 5-keto-4-deoxyuronate isomerase, at 116,673 to 117,515 SMa0214 Position (kb) 114 115 116Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 113.747 kb on + strandat 113.748 kb on - strandat 113.748 kb on - strandat 113.748 kb on - strandat 113.864 kb on + strandat 113.864 kb on + strandat 113.865 kb on - strandat 113.959 kb on + strand, within SMa0206at 113.971 kb on + strand, within SMa0206at 114.086 kb on + strand, within SMa0206at 114.086 kb on + strand, within SMa0206at 114.087 kb on - strand, within SMa0206at 114.087 kb on - strand, within SMa0206at 114.134 kb on + strand, within SMa0206at 114.310 kb on + strand, within SMa0206at 114.311 kb on - strand, within SMa0206at 114.398 kb on + strand, within SMa0206at 114.489 kb on - strandat 114.489 kb on - strandat 114.519 kb on + strandat 114.600 kb on + strandat 114.601 kb on - strandat 114.629 kb on - strandat 114.649 kb on + strandat 114.693 kb on + strandat 114.801 kb on + strand, within SMa0209at 114.807 kb on + strand, within SMa0209at 114.807 kb on + strand, within SMa0209at 114.837 kb on - strand, within SMa0209at 114.837 kb on - strand, within SMa0209at 114.849 kb on + strand, within SMa0209at 114.853 kb on + strand, within SMa0209at 114.853 kb on + strand, within SMa0209at 114.853 kb on + strand, within SMa0209at 114.853 kb on + strand, within SMa0209at 114.980 kb on + strand, within SMa0209at 115.067 kb on + strand, within SMa0209at 115.067 kb on + strand, within SMa0209at 115.068 kb on - strand, within SMa0209at 115.071 kb on + strand, within SMa0209at 115.274 kb on + strand, within SMa0209at 115.274 kb on + strand, within SMa0209at 115.274 kb on + strand, within SMa0209at 115.275 kb on - strand, within SMa0209at 115.275 kb on - strand, within SMa0209at 115.278 kb on + strand, within SMa0209at 115.278 kb on + strand, within SMa0209at 115.278 kb on + strand, within SMa0209at 115.278 kb on + strand, within SMa0209at 115.279 kb on - strand, within SMa0209at 115.279 kb on - strand, within SMa0209at 115.280 kb on + strand, within SMa0209at 115.281 kb on - strand, within SMa0209at 115.317 kb on + strand, within SMa0209at 115.317 kb on + strand, within SMa0209at 115.318 kb on - strand, within SMa0209at 115.318 kb on - strand, within SMa0209at 115.464 kb on + strand, within SMa0209at 115.465 kb on - strand, within SMa0209at 115.569 kb on - strand, within SMa0209at 115.604 kb on - strand, within SMa0209at 115.604 kb on - strand, within SMa0209at 115.606 kb on + strand, within SMa0209at 115.606 kb on + strand, within SMa0209at 115.608 kb on + strand, within SMa0209at 115.608 kb on + strand, within SMa0209at 115.609 kb on - strand, within SMa0209at 115.609 kb on - strand, within SMa0209at 115.697 kb on + strandat 115.698 kb on - strandat 115.756 kb on - strandat 115.756 kb on - strandat 115.756 kb on - strandat 115.782 kb on + strandat 115.895 kb on + strand, within SMa0210at 115.960 kb on + strand, within SMa0210at 115.960 kb on + strand, within SMa0210at 116.009 kb on + strand, within SMa0210at 116.010 kb on - strand, within SMa0210at 116.020 kb on + strand, within SMa0210at 116.020 kb on + strand, within SMa0210at 116.123 kb on - strandat 116.132 kb on - strandat 116.284 kb on + strand, within SMa0211at 116.292 kb on - strand, within SMa0211at 116.544 kb on + strandat 116.604 kb on + strandat 116.605 kb on - strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.675 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
remove
113,747 + -0.1
113,748 - -0.3
113,748 - +0.5
113,748 - +0.1
113,864 + -0.3
113,864 + -0.8
113,865 - +1.0
113,959 + SMa0206 0.19 +0.1
113,971 + SMa0206 0.21 -0.1
114,086 + SMa0206 0.37 +1.1
114,086 + SMa0206 0.37 +4.3
114,087 - SMa0206 0.37 +1.0
114,087 - SMa0206 0.37 -0.6
114,134 + SMa0206 0.43 +4.0
114,310 + SMa0206 0.67 +0.0
114,311 - SMa0206 0.68 +0.1
114,398 + SMa0206 0.80 -1.3
114,489 - -2.3
114,489 - -0.1
114,519 + -0.2
114,600 + -0.3
114,601 - -0.3
114,629 - +0.2
114,649 + -0.0
114,693 + +0.7
114,801 + SMa0209 0.12 +0.1
114,807 + SMa0209 0.13 -2.2
114,807 + SMa0209 0.13 +0.0
114,837 - SMa0209 0.15 -0.1
114,837 - SMa0209 0.15 -1.0
114,849 + SMa0209 0.17 +0.3
114,853 + SMa0209 0.17 -0.6
114,853 + SMa0209 0.17 -0.1
114,853 + SMa0209 0.17 -0.8
114,853 + SMa0209 0.17 +0.6
114,980 + SMa0209 0.29 -0.3
115,067 + SMa0209 0.37 +1.2
115,067 + SMa0209 0.37 -0.1
115,068 - SMa0209 0.37 +0.5
115,071 + SMa0209 0.37 -0.1
115,274 + SMa0209 0.56 +1.2
115,274 + SMa0209 0.56 +0.1
115,274 + SMa0209 0.56 -1.5
115,275 - SMa0209 0.56 +0.0
115,275 - SMa0209 0.56 +0.2
115,278 + SMa0209 0.56 -0.9
115,278 + SMa0209 0.56 -0.7
115,278 + SMa0209 0.56 -0.2
115,278 + SMa0209 0.56 +0.5
115,279 - SMa0209 0.56 +0.0
115,279 - SMa0209 0.56 +0.0
115,280 + SMa0209 0.56 -1.0
115,281 - SMa0209 0.56 -0.4
115,317 + SMa0209 0.60 -0.9
115,317 + SMa0209 0.60 -0.1
115,318 - SMa0209 0.60 -0.5
115,318 - SMa0209 0.60 +2.0
115,464 + SMa0209 0.73 +1.0
115,465 - SMa0209 0.73 +0.2
115,569 - SMa0209 0.83 -0.3
115,604 - SMa0209 0.86 -1.1
115,604 - SMa0209 0.86 -0.8
115,606 + SMa0209 0.86 +0.0
115,606 + SMa0209 0.86 -0.6
115,608 + SMa0209 0.86 -0.4
115,608 + SMa0209 0.86 -1.6
115,609 - SMa0209 0.86 -1.0
115,609 - SMa0209 0.86 -2.4
115,697 + +1.1
115,698 - -0.4
115,756 - +0.2
115,756 - -0.4
115,756 - +1.4
115,782 + -0.0
115,895 + SMa0210 0.16 +1.2
115,960 + SMa0210 0.40 +4.2
115,960 + SMa0210 0.40 +0.7
116,009 + SMa0210 0.59 +0.2
116,010 - SMa0210 0.59 +1.5
116,020 + SMa0210 0.63 +0.8
116,020 + SMa0210 0.63 -0.4
116,123 - -0.3
116,132 - +2.1
116,284 + SMa0211 0.12 +0.2
116,292 - SMa0211 0.16 +0.4
116,544 + +0.9
116,604 + -0.7
116,605 - +0.3
116,670 + -0.6
116,670 + -0.7
116,670 + +0.3
116,670 + +1.7
116,675 - +0.7

Or see this region's nucleotide sequence