Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0191 and SMa0193 overlap by 4 nucleotides SMa0193 and SMa0196 are separated by 296 nucleotides SMa0196 and SMa0197 are separated by 14 nucleotides SMa0197 and SMa0198 overlap by 4 nucleotides
SMa0191: SMa0191 - hypothetical protein, at 105,799 to 106,329
SMa0191
SMa0193: SMa0193 - hypothetical protein, at 106,326 to 106,652
SMa0193
SMa0196: SMa0196 - gluconolactonase, at 106,949 to 107,863
SMa0196
SMa0197: SMa0197 - ABC transporter permease, at 107,878 to 108,825
SMa0197
SMa0198: SMa0198 - ABC transporter permease, at 108,822 to 109,769
SMa0198
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 105.976 kb on + strand, within SMa0191 at 105.977 kb on - strand, within SMa0191 at 106.080 kb on + strand, within SMa0191 at 106.109 kb on + strand, within SMa0191 at 106.110 kb on - strand, within SMa0191 at 106.110 kb on - strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.250 kb on + strand, within SMa0191 at 106.347 kb on + strand at 106.449 kb on - strand, within SMa0193 at 106.735 kb on + strand at 106.841 kb on + strand at 106.950 kb on + strand at 106.981 kb on - strand at 106.989 kb on + strand at 107.243 kb on + strand, within SMa0196 at 107.424 kb on + strand, within SMa0196 at 107.425 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.629 kb on + strand, within SMa0196 at 107.630 kb on - strand, within SMa0196 at 107.630 kb on - strand, within SMa0196 at 107.781 kb on + strand at 107.782 kb on - strand at 107.844 kb on + strand at 107.969 kb on + strand at 108.182 kb on + strand, within SMa0197 at 108.182 kb on + strand, within SMa0197 at 108.182 kb on + strand, within SMa0197 at 108.269 kb on + strand, within SMa0197 at 108.270 kb on - strand, within SMa0197 at 108.361 kb on - strand, within SMa0197 at 108.489 kb on + strand, within SMa0197 at 108.491 kb on + strand, within SMa0197 at 108.492 kb on - strand, within SMa0197 at 108.813 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 105,976 + SMa0191 0.33 -0.4 105,977 - SMa0191 0.34 +0.8 106,080 + SMa0191 0.53 +0.8 106,109 + SMa0191 0.58 -0.1 106,110 - SMa0191 0.59 +1.3 106,110 - SMa0191 0.59 +0.1 106,167 + SMa0191 0.69 +2.7 106,167 + SMa0191 0.69 +0.8 106,167 + SMa0191 0.69 -0.2 106,167 + SMa0191 0.69 -0.7 106,250 + SMa0191 0.85 +0.0 106,347 + +2.6 106,449 - SMa0193 0.38 -2.9 106,735 + +0.0 106,841 + +2.3 106,950 + +0.2 106,981 - -0.9 106,989 + +1.0 107,243 + SMa0196 0.32 -0.4 107,424 + SMa0196 0.52 +0.3 107,425 - SMa0196 0.52 +0.2 107,452 - SMa0196 0.55 -0.6 107,452 - SMa0196 0.55 -0.5 107,452 - SMa0196 0.55 -1.3 107,629 + SMa0196 0.74 +0.0 107,630 - SMa0196 0.74 -0.8 107,630 - SMa0196 0.74 -0.6 107,781 + +0.5 107,782 - -0.4 107,844 + -0.6 107,969 + -0.4 108,182 + SMa0197 0.32 -1.6 108,182 + SMa0197 0.32 +0.6 108,182 + SMa0197 0.32 -1.0 108,269 + SMa0197 0.41 +0.0 108,270 - SMa0197 0.41 +1.3 108,361 - SMa0197 0.51 +0.1 108,489 + SMa0197 0.64 +0.2 108,491 + SMa0197 0.65 +0.3 108,492 - SMa0197 0.65 +0.5 108,813 + +0.5
Or see this region's nucleotide sequence