Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21684

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21418 and SM_b21419 are separated by 22 nucleotidesSM_b21419 and SM_b21684 are separated by 21 nucleotidesSM_b21684 and SM_b21420 overlap by 4 nucleotides SM_b21418: SM_b21418 - NDP-hexose 3-C-methyltransferase, at 1,347,789 to 1,349,021 _b21418 SM_b21419: SM_b21419 - AraC family transcriptional regulator, at 1,349,044 to 1,349,931 _b21419 SM_b21684: SM_b21684 - hypothetical protein, at 1,349,953 to 1,350,180 _b21684 SM_b21420: SM_b21420 - L-arabinose isomerase, at 1,350,177 to 1,351,604 _b21420 Position (kb) 1349 1350 1351Strain fitness (log2 ratio) -2 -1 0 1 2at 1348.962 kb on + strandat 1348.962 kb on + strandat 1348.963 kb on - strandat 1348.963 kb on - strandat 1348.963 kb on - strandat 1348.964 kb on + strandat 1349.076 kb on - strandat 1349.166 kb on + strand, within SM_b21419at 1349.166 kb on + strand, within SM_b21419at 1349.167 kb on - strand, within SM_b21419at 1349.167 kb on - strand, within SM_b21419at 1349.172 kb on + strand, within SM_b21419at 1349.172 kb on + strand, within SM_b21419at 1349.178 kb on + strand, within SM_b21419at 1349.178 kb on + strand, within SM_b21419at 1349.260 kb on + strand, within SM_b21419at 1349.261 kb on - strand, within SM_b21419at 1349.274 kb on - strand, within SM_b21419at 1349.279 kb on + strand, within SM_b21419at 1349.279 kb on + strand, within SM_b21419at 1349.280 kb on - strand, within SM_b21419at 1349.280 kb on - strand, within SM_b21419at 1349.413 kb on + strand, within SM_b21419at 1349.413 kb on + strand, within SM_b21419at 1349.443 kb on + strand, within SM_b21419at 1349.444 kb on - strand, within SM_b21419at 1349.444 kb on - strand, within SM_b21419at 1349.444 kb on - strand, within SM_b21419at 1349.551 kb on + strand, within SM_b21419at 1349.552 kb on - strand, within SM_b21419at 1349.552 kb on - strand, within SM_b21419at 1349.597 kb on - strand, within SM_b21419at 1349.836 kb on + strand, within SM_b21419at 1349.903 kb on + strandat 1350.010 kb on - strand, within SM_b21684at 1350.093 kb on + strand, within SM_b21684at 1350.093 kb on + strand, within SM_b21684at 1350.093 kb on + strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.094 kb on - strand, within SM_b21684at 1350.228 kb on + strandat 1350.229 kb on - strandat 1350.229 kb on - strandat 1350.270 kb on + strandat 1350.270 kb on + strandat 1350.271 kb on - strandat 1350.271 kb on - strandat 1350.271 kb on - strandat 1350.354 kb on + strand, within SM_b21420at 1350.354 kb on + strand, within SM_b21420at 1350.355 kb on - strand, within SM_b21420at 1350.355 kb on - strand, within SM_b21420at 1350.392 kb on + strand, within SM_b21420at 1350.393 kb on - strand, within SM_b21420at 1350.397 kb on + strand, within SM_b21420at 1350.397 kb on + strand, within SM_b21420at 1350.398 kb on - strand, within SM_b21420at 1350.398 kb on - strand, within SM_b21420at 1350.398 kb on - strand, within SM_b21420at 1350.413 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.417 kb on + strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.418 kb on - strand, within SM_b21420at 1350.723 kb on - strand, within SM_b21420at 1350.750 kb on + strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.751 kb on - strand, within SM_b21420at 1350.752 kb on + strand, within SM_b21420at 1350.771 kb on + strand, within SM_b21420at 1350.771 kb on + strand, within SM_b21420at 1350.771 kb on + strand, within SM_b21420at 1350.772 kb on - strand, within SM_b21420at 1351.011 kb on + strand, within SM_b21420at 1351.012 kb on - strand, within SM_b21420at 1351.015 kb on - strand, within SM_b21420at 1351.015 kb on - strand, within SM_b21420at 1351.017 kb on + strand, within SM_b21420at 1351.041 kb on + strand, within SM_b21420at 1351.041 kb on + strand, within SM_b21420at 1351.042 kb on - strand, within SM_b21420

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,348,962 + +1.1
1,348,962 + +1.6
1,348,963 - +1.5
1,348,963 - +0.5
1,348,963 - -1.8
1,348,964 + +0.5
1,349,076 - +0.5
1,349,166 + SM_b21419 0.14 +0.0
1,349,166 + SM_b21419 0.14 -0.1
1,349,167 - SM_b21419 0.14 -0.9
1,349,167 - SM_b21419 0.14 +2.4
1,349,172 + SM_b21419 0.14 -1.9
1,349,172 + SM_b21419 0.14 +0.4
1,349,178 + SM_b21419 0.15 -0.2
1,349,178 + SM_b21419 0.15 -1.6
1,349,260 + SM_b21419 0.24 -1.4
1,349,261 - SM_b21419 0.24 +0.4
1,349,274 - SM_b21419 0.26 +0.4
1,349,279 + SM_b21419 0.26 -0.0
1,349,279 + SM_b21419 0.26 -0.0
1,349,280 - SM_b21419 0.27 +0.1
1,349,280 - SM_b21419 0.27 -0.3
1,349,413 + SM_b21419 0.42 +0.8
1,349,413 + SM_b21419 0.42 +0.9
1,349,443 + SM_b21419 0.45 +2.6
1,349,444 - SM_b21419 0.45 -2.5
1,349,444 - SM_b21419 0.45 -0.3
1,349,444 - SM_b21419 0.45 -0.1
1,349,551 + SM_b21419 0.57 -0.2
1,349,552 - SM_b21419 0.57 -0.6
1,349,552 - SM_b21419 0.57 -0.2
1,349,597 - SM_b21419 0.62 +0.2
1,349,836 + SM_b21419 0.89 +0.0
1,349,903 + +0.4
1,350,010 - SM_b21684 0.25 -1.3
1,350,093 + SM_b21684 0.61 +0.4
1,350,093 + SM_b21684 0.61 +0.4
1,350,093 + SM_b21684 0.61 -0.1
1,350,094 - SM_b21684 0.62 -0.6
1,350,094 - SM_b21684 0.62 +0.8
1,350,094 - SM_b21684 0.62 -1.3
1,350,094 - SM_b21684 0.62 +0.2
1,350,094 - SM_b21684 0.62 -0.0
1,350,094 - SM_b21684 0.62 -2.4
1,350,094 - SM_b21684 0.62 +0.0
1,350,094 - SM_b21684 0.62 +0.4
1,350,094 - SM_b21684 0.62 +1.0
1,350,094 - SM_b21684 0.62 -1.1
1,350,228 + +0.2
1,350,229 - +1.1
1,350,229 - -0.5
1,350,270 + +0.1
1,350,270 + -0.1
1,350,271 - -0.3
1,350,271 - +0.1
1,350,271 - +0.2
1,350,354 + SM_b21420 0.12 -0.3
1,350,354 + SM_b21420 0.12 -0.1
1,350,355 - SM_b21420 0.12 -0.3
1,350,355 - SM_b21420 0.12 -1.8
1,350,392 + SM_b21420 0.15 +0.5
1,350,393 - SM_b21420 0.15 -0.0
1,350,397 + SM_b21420 0.15 +0.3
1,350,397 + SM_b21420 0.15 -0.3
1,350,398 - SM_b21420 0.15 +0.4
1,350,398 - SM_b21420 0.15 +0.4
1,350,398 - SM_b21420 0.15 +0.3
1,350,413 + SM_b21420 0.17 -1.1
1,350,417 + SM_b21420 0.17 -1.5
1,350,417 + SM_b21420 0.17 +0.0
1,350,417 + SM_b21420 0.17 -1.1
1,350,417 + SM_b21420 0.17 +1.4
1,350,417 + SM_b21420 0.17 -0.6
1,350,417 + SM_b21420 0.17 -1.2
1,350,417 + SM_b21420 0.17 +1.0
1,350,417 + SM_b21420 0.17 +0.8
1,350,417 + SM_b21420 0.17 -1.2
1,350,418 - SM_b21420 0.17 +0.2
1,350,418 - SM_b21420 0.17 +0.6
1,350,418 - SM_b21420 0.17 +0.1
1,350,418 - SM_b21420 0.17 -0.1
1,350,418 - SM_b21420 0.17 -0.1
1,350,418 - SM_b21420 0.17 -0.3
1,350,418 - SM_b21420 0.17 -0.0
1,350,723 - SM_b21420 0.38 -0.8
1,350,750 + SM_b21420 0.40 -1.8
1,350,751 - SM_b21420 0.40 +1.0
1,350,751 - SM_b21420 0.40 +0.8
1,350,751 - SM_b21420 0.40 +0.3
1,350,751 - SM_b21420 0.40 -0.4
1,350,751 - SM_b21420 0.40 +0.5
1,350,751 - SM_b21420 0.40 -0.1
1,350,752 + SM_b21420 0.40 -0.3
1,350,771 + SM_b21420 0.42 +0.5
1,350,771 + SM_b21420 0.42 -0.6
1,350,771 + SM_b21420 0.42 -0.0
1,350,772 - SM_b21420 0.42 -0.6
1,351,011 + SM_b21420 0.58 -0.4
1,351,012 - SM_b21420 0.58 -0.2
1,351,015 - SM_b21420 0.59 -0.5
1,351,015 - SM_b21420 0.59 -0.8
1,351,017 + SM_b21420 0.59 -1.1
1,351,041 + SM_b21420 0.61 -0.4
1,351,041 + SM_b21420 0.61 +2.4
1,351,042 - SM_b21420 0.61 -0.5

Or see this region's nucleotide sequence