Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21639

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21637 and SM_b21638 are separated by 9 nucleotidesSM_b21638 and SM_b21639 overlap by 1 nucleotidesSM_b21639 and SM_b21640 are separated by 19 nucleotides SM_b21637: SM_b21637 - phenylacetic acid degradation protein, at 1,666,208 to 1,666,732 _b21637 SM_b21638: SM_b21638 - phenylacetic acid degradation protein, at 1,666,742 to 1,667,527 _b21638 SM_b21639: SM_b21639 - phenylacetate-CoA oxygenase subunit PaaB, at 1,667,527 to 1,667,811 _b21639 SM_b21640: SM_b21640 - phenylacetate-CoA oxygenase subunit PaaA, at 1,667,831 to 1,668,829 _b21640 Position (kb) 1667 1668Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.698 kb on - strandat 1666.698 kb on - strandat 1666.719 kb on - strandat 1666.733 kb on - strandat 1666.743 kb on + strandat 1666.743 kb on + strandat 1666.744 kb on - strandat 1666.797 kb on + strandat 1666.798 kb on - strandat 1666.798 kb on - strandat 1666.843 kb on + strand, within SM_b21638at 1666.843 kb on + strand, within SM_b21638at 1666.844 kb on - strand, within SM_b21638at 1666.845 kb on + strand, within SM_b21638at 1666.994 kb on - strand, within SM_b21638at 1666.995 kb on + strand, within SM_b21638at 1666.996 kb on - strand, within SM_b21638at 1666.996 kb on - strand, within SM_b21638at 1666.996 kb on - strand, within SM_b21638at 1667.006 kb on - strand, within SM_b21638at 1667.026 kb on + strand, within SM_b21638at 1667.027 kb on - strand, within SM_b21638at 1667.094 kb on + strand, within SM_b21638at 1667.094 kb on + strand, within SM_b21638at 1667.094 kb on + strand, within SM_b21638at 1667.095 kb on - strand, within SM_b21638at 1667.095 kb on - strand, within SM_b21638at 1667.175 kb on + strand, within SM_b21638at 1667.175 kb on + strand, within SM_b21638at 1667.175 kb on + strand, within SM_b21638at 1667.176 kb on - strand, within SM_b21638at 1667.176 kb on - strand, within SM_b21638at 1667.280 kb on + strand, within SM_b21638at 1667.280 kb on + strandat 1667.280 kb on + strand, within SM_b21638at 1667.449 kb on + strandat 1667.450 kb on - strandat 1667.450 kb on - strandat 1667.577 kb on - strand, within SM_b21639at 1667.577 kb on - strand, within SM_b21639at 1667.636 kb on - strand, within SM_b21639at 1667.686 kb on - strand, within SM_b21639at 1667.687 kb on + strand, within SM_b21639at 1667.687 kb on + strand, within SM_b21639at 1667.688 kb on - strand, within SM_b21639at 1667.811 kb on + strandat 1667.812 kb on - strandat 1667.812 kb on - strandat 1667.812 kb on - strandat 1667.812 kb on - strandat 1667.950 kb on + strand, within SM_b21640at 1667.951 kb on - strand, within SM_b21640at 1667.951 kb on - strand, within SM_b21640at 1668.445 kb on - strand, within SM_b21640at 1668.463 kb on - strand, within SM_b21640at 1668.463 kb on - strand, within SM_b21640at 1668.534 kb on + strand, within SM_b21640at 1668.534 kb on + strand, within SM_b21640at 1668.535 kb on - strand, within SM_b21640at 1668.541 kb on - strand, within SM_b21640at 1668.541 kb on - strand, within SM_b21640at 1668.541 kb on - strand, within SM_b21640

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,666,697 + -0.5
1,666,697 + -0.4
1,666,697 + -0.1
1,666,697 + -0.2
1,666,697 + +3.2
1,666,697 + -0.3
1,666,698 - +0.1
1,666,698 - +0.9
1,666,719 - -0.2
1,666,733 - -0.1
1,666,743 + -1.2
1,666,743 + +0.1
1,666,744 - -0.7
1,666,797 + -0.5
1,666,798 - +0.2
1,666,798 - -0.1
1,666,843 + SM_b21638 0.13 -0.4
1,666,843 + SM_b21638 0.13 -0.6
1,666,844 - SM_b21638 0.13 -2.1
1,666,845 + SM_b21638 0.13 -1.8
1,666,994 - SM_b21638 0.32 -1.5
1,666,995 + SM_b21638 0.32 -0.4
1,666,996 - SM_b21638 0.32 -0.5
1,666,996 - SM_b21638 0.32 +3.8
1,666,996 - SM_b21638 0.32 +0.3
1,667,006 - SM_b21638 0.34 -0.6
1,667,026 + SM_b21638 0.36 +0.3
1,667,027 - SM_b21638 0.36 -0.1
1,667,094 + SM_b21638 0.45 -0.2
1,667,094 + SM_b21638 0.45 -1.0
1,667,094 + SM_b21638 0.45 +0.6
1,667,095 - SM_b21638 0.45 +0.0
1,667,095 - SM_b21638 0.45 -2.5
1,667,175 + SM_b21638 0.55 +1.3
1,667,175 + SM_b21638 0.55 +0.1
1,667,175 + SM_b21638 0.55 -0.6
1,667,176 - SM_b21638 0.55 +0.3
1,667,176 - SM_b21638 0.55 +0.4
1,667,280 + SM_b21638 0.68 +0.1
1,667,280 + -0.0
1,667,280 + SM_b21638 0.68 +0.6
1,667,449 + -0.0
1,667,450 - +0.1
1,667,450 - +0.1
1,667,577 - SM_b21639 0.18 -0.8
1,667,577 - SM_b21639 0.18 -1.8
1,667,636 - SM_b21639 0.38 -0.1
1,667,686 - SM_b21639 0.56 +0.0
1,667,687 + SM_b21639 0.56 -0.1
1,667,687 + SM_b21639 0.56 +0.1
1,667,688 - SM_b21639 0.56 -0.2
1,667,811 + -0.2
1,667,812 - +1.5
1,667,812 - +0.3
1,667,812 - +0.9
1,667,812 - -2.9
1,667,950 + SM_b21640 0.12 -1.0
1,667,951 - SM_b21640 0.12 -0.0
1,667,951 - SM_b21640 0.12 -0.6
1,668,445 - SM_b21640 0.61 -0.0
1,668,463 - SM_b21640 0.63 -1.7
1,668,463 - SM_b21640 0.63 -1.4
1,668,534 + SM_b21640 0.70 +0.4
1,668,534 + SM_b21640 0.70 -0.5
1,668,535 - SM_b21640 0.70 -0.3
1,668,541 - SM_b21640 0.71 -0.2
1,668,541 - SM_b21640 0.71 -0.1
1,668,541 - SM_b21640 0.71 -1.8

Or see this region's nucleotide sequence