Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21538 and SM_b21539 overlap by 4 nucleotides SM_b21539 and SM_b21671 are separated by 6 nucleotides SM_b21671 and SM_b21540 are separated by 222 nucleotides
SM_b21538: SM_b21538 - phosphonoacetate hydrolase, at 1,067,004 to 1,068,278
_b21538
SM_b21539: SM_b21539 - aldehyde dehydrogenase, at 1,068,275 to 1,069,732
_b21539
SM_b21671: SM_b21671 - hypothetical protein, at 1,069,739 to 1,070,227
_b21671
SM_b21540: SM_b21540 - iron uptake ABC transporter substrate-binding protein precursor, at 1,070,450 to 1,071,472
_b21540
Position (kb)
1068
1069
1070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1067.355 kb on + strand, within SM_b21538 at 1067.356 kb on - strand, within SM_b21538 at 1067.545 kb on - strand, within SM_b21538 at 1067.619 kb on + strand, within SM_b21538 at 1067.620 kb on - strand, within SM_b21538 at 1067.620 kb on - strand, within SM_b21538 at 1067.620 kb on - strand, within SM_b21538 at 1067.637 kb on + strand, within SM_b21538 at 1067.637 kb on + strand, within SM_b21538 at 1067.637 kb on + strand, within SM_b21538 at 1067.652 kb on + strand, within SM_b21538 at 1067.653 kb on - strand, within SM_b21538 at 1067.653 kb on - strand, within SM_b21538 at 1067.653 kb on - strand, within SM_b21538 at 1067.653 kb on - strand, within SM_b21538 at 1067.802 kb on + strand, within SM_b21538 at 1067.802 kb on + strand, within SM_b21538 at 1067.803 kb on - strand, within SM_b21538 at 1067.803 kb on - strand, within SM_b21538 at 1067.874 kb on + strand, within SM_b21538 at 1067.874 kb on + strand, within SM_b21538 at 1067.874 kb on + strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.875 kb on - strand, within SM_b21538 at 1067.916 kb on + strand, within SM_b21538 at 1068.325 kb on - strand at 1068.358 kb on - strand at 1068.452 kb on + strand, within SM_b21539 at 1068.453 kb on - strand, within SM_b21539 at 1068.584 kb on + strand at 1068.584 kb on + strand, within SM_b21539 at 1068.613 kb on + strand, within SM_b21539 at 1068.613 kb on + strand, within SM_b21539 at 1068.867 kb on - strand, within SM_b21539 at 1069.542 kb on - strand, within SM_b21539 at 1069.560 kb on - strand, within SM_b21539 at 1069.560 kb on - strand, within SM_b21539 at 1069.662 kb on - strand at 1069.750 kb on + strand at 1069.753 kb on + strand at 1069.753 kb on + strand at 1069.754 kb on - strand at 1069.754 kb on - strand at 1069.769 kb on + strand at 1069.769 kb on + strand at 1070.008 kb on - strand, within SM_b21671 at 1070.023 kb on - strand, within SM_b21671 at 1070.094 kb on + strand, within SM_b21671 at 1070.216 kb on + strand at 1070.216 kb on + strand at 1070.216 kb on + strand at 1070.216 kb on + strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.217 kb on - strand at 1070.218 kb on + strand at 1070.218 kb on + strand at 1070.219 kb on - strand at 1070.219 kb on - strand at 1070.225 kb on + strand at 1070.234 kb on - strand at 1070.236 kb on + strand at 1070.446 kb on + strand at 1070.447 kb on - strand at 1070.447 kb on - strand at 1070.538 kb on - strand at 1070.538 kb on - strand at 1070.570 kb on + strand, within SM_b21540 at 1070.571 kb on - strand, within SM_b21540
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,067,355 + SM_b21538 0.28 -0.1 1,067,356 - SM_b21538 0.28 -0.1 1,067,545 - SM_b21538 0.42 +2.0 1,067,619 + SM_b21538 0.48 +0.6 1,067,620 - SM_b21538 0.48 -0.4 1,067,620 - SM_b21538 0.48 -0.2 1,067,620 - SM_b21538 0.48 +0.5 1,067,637 + SM_b21538 0.50 +0.5 1,067,637 + SM_b21538 0.50 +0.1 1,067,637 + SM_b21538 0.50 +0.7 1,067,652 + SM_b21538 0.51 +0.3 1,067,653 - SM_b21538 0.51 +0.3 1,067,653 - SM_b21538 0.51 +0.7 1,067,653 - SM_b21538 0.51 +0.2 1,067,653 - SM_b21538 0.51 -1.0 1,067,802 + SM_b21538 0.63 -2.9 1,067,802 + SM_b21538 0.63 +0.4 1,067,803 - SM_b21538 0.63 -0.9 1,067,803 - SM_b21538 0.63 -0.7 1,067,874 + SM_b21538 0.68 -0.2 1,067,874 + SM_b21538 0.68 -0.7 1,067,874 + SM_b21538 0.68 +0.4 1,067,875 - SM_b21538 0.68 -1.4 1,067,875 - SM_b21538 0.68 -0.8 1,067,875 - SM_b21538 0.68 +0.7 1,067,875 - SM_b21538 0.68 -2.0 1,067,875 - SM_b21538 0.68 +0.1 1,067,916 + SM_b21538 0.72 +2.8 1,068,325 - -0.1 1,068,358 - -1.7 1,068,452 + SM_b21539 0.12 +0.4 1,068,453 - SM_b21539 0.12 -2.7 1,068,584 + +0.4 1,068,584 + SM_b21539 0.21 -0.7 1,068,613 + SM_b21539 0.23 -0.2 1,068,613 + SM_b21539 0.23 -0.4 1,068,867 - SM_b21539 0.41 +0.3 1,069,542 - SM_b21539 0.87 -0.8 1,069,560 - SM_b21539 0.88 -0.3 1,069,560 - SM_b21539 0.88 -0.3 1,069,662 - -0.1 1,069,750 + -1.2 1,069,753 + -0.4 1,069,753 + -1.5 1,069,754 - +0.4 1,069,754 - -0.1 1,069,769 + -0.3 1,069,769 + +1.6 1,070,008 - SM_b21671 0.55 -0.4 1,070,023 - SM_b21671 0.58 -0.3 1,070,094 + SM_b21671 0.73 +0.3 1,070,216 + -2.0 1,070,216 + -2.7 1,070,216 + -0.1 1,070,216 + -0.3 1,070,217 - -0.1 1,070,217 - +0.0 1,070,217 - -0.1 1,070,217 - +0.5 1,070,217 - -0.3 1,070,217 - +0.4 1,070,218 + -2.6 1,070,218 + +0.4 1,070,219 - +1.4 1,070,219 - -0.6 1,070,225 + -0.8 1,070,234 - +1.0 1,070,236 + -0.2 1,070,446 + -0.9 1,070,447 - -1.3 1,070,447 - -2.2 1,070,538 - -0.0 1,070,538 - -1.6 1,070,570 + SM_b21540 0.12 +0.0 1,070,571 - SM_b21540 0.12 +1.3
Or see this region's nucleotide sequence