Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21287

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21286 and SM_b21287 are separated by 13 nucleotidesSM_b21287 and SM_b21288 are separated by 26 nucleotidesSM_b21288 and SM_b21289 overlap by 11 nucleotides SM_b21286: SM_b21286 - xanthine dehydrogenase, at 860,864 to 862,345 _b21286 SM_b21287: SM_b21287 - xanthine dehydrogenase, at 862,359 to 864,692 _b21287 SM_b21288: SM_b21288 - xanthine dehydrogenase, at 864,719 to 865,585 _b21288 SM_b21289: SM_b21289 - protein, may interact with ubiquitin, at 865,575 to 866,078 _b21289 Position (kb) 862 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 861.681 kb on - strand, within SM_b21286at 861.787 kb on + strand, within SM_b21286at 861.993 kb on - strand, within SM_b21286at 862.021 kb on + strand, within SM_b21286at 862.022 kb on - strand, within SM_b21286at 862.022 kb on - strand, within SM_b21286at 862.340 kb on - strandat 862.340 kb on - strandat 862.343 kb on + strandat 862.343 kb on + strandat 862.343 kb on + strandat 862.343 kb on + strandat 862.343 kb on + strandat 862.344 kb on - strandat 862.344 kb on - strandat 862.455 kb on + strandat 862.456 kb on - strandat 862.457 kb on + strandat 862.457 kb on + strandat 862.457 kb on + strandat 862.457 kb on + strandat 862.458 kb on - strandat 862.458 kb on - strandat 862.459 kb on + strandat 862.459 kb on + strandat 862.460 kb on - strandat 862.466 kb on + strandat 862.467 kb on - strandat 862.497 kb on + strandat 862.600 kb on + strand, within SM_b21287at 862.600 kb on + strand, within SM_b21287at 862.600 kb on + strand, within SM_b21287at 862.741 kb on + strand, within SM_b21287at 862.741 kb on + strand, within SM_b21287at 863.223 kb on + strand, within SM_b21287at 863.223 kb on + strand, within SM_b21287at 863.223 kb on + strand, within SM_b21287at 863.223 kb on + strand, within SM_b21287at 863.224 kb on - strand, within SM_b21287at 863.352 kb on + strand, within SM_b21287at 863.353 kb on - strand, within SM_b21287at 863.556 kb on + strand, within SM_b21287at 863.622 kb on + strand, within SM_b21287at 863.763 kb on + strand, within SM_b21287at 863.764 kb on - strand, within SM_b21287at 863.764 kb on - strand, within SM_b21287at 863.765 kb on + strand, within SM_b21287at 863.821 kb on - strand, within SM_b21287at 863.860 kb on + strand, within SM_b21287at 863.860 kb on + strand, within SM_b21287at 863.860 kb on + strand, within SM_b21287at 863.873 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 864.098 kb on + strand, within SM_b21287at 864.098 kb on + strand, within SM_b21287at 864.098 kb on + strand, within SM_b21287at 864.099 kb on - strand, within SM_b21287at 864.111 kb on + strand, within SM_b21287at 864.112 kb on - strand, within SM_b21287at 864.148 kb on - strand, within SM_b21287at 864.201 kb on + strand, within SM_b21287at 864.201 kb on + strand, within SM_b21287at 864.204 kb on + strand, within SM_b21287at 864.205 kb on - strand, within SM_b21287at 864.262 kb on - strand, within SM_b21287at 864.262 kb on - strand, within SM_b21287at 864.282 kb on - strand, within SM_b21287at 864.429 kb on + strand, within SM_b21287at 864.429 kb on + strand, within SM_b21287at 864.429 kb on + strand, within SM_b21287at 864.429 kb on + strand, within SM_b21287at 864.430 kb on - strand, within SM_b21287at 864.608 kb on + strandat 864.747 kb on + strandat 864.748 kb on - strandat 865.085 kb on + strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.344 kb on - strand, within SM_b21288at 865.357 kb on - strand, within SM_b21288at 865.357 kb on - strand, within SM_b21288at 865.357 kb on - strand, within SM_b21288at 865.510 kb on - strandat 865.583 kb on + strandat 865.583 kb on + strandat 865.583 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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861,681 - SM_b21286 0.55 +0.7
861,787 + SM_b21286 0.62 -0.8
861,993 - SM_b21286 0.76 +0.5
862,021 + SM_b21286 0.78 -0.2
862,022 - SM_b21286 0.78 +0.2
862,022 - SM_b21286 0.78 +1.4
862,340 - -1.1
862,340 - -3.2
862,343 + -1.5
862,343 + +3.0
862,343 + -1.3
862,343 + -1.4
862,343 + +1.0
862,344 - -1.3
862,344 - -0.7
862,455 + -0.6
862,456 - +0.0
862,457 + +2.0
862,457 + -1.3
862,457 + +0.3
862,457 + +1.2
862,458 - -2.8
862,458 - +0.2
862,459 + +0.1
862,459 + +1.7
862,460 - +0.1
862,466 + +1.0
862,467 - -0.4
862,497 + -0.1
862,600 + SM_b21287 0.10 +0.5
862,600 + SM_b21287 0.10 -0.9
862,600 + SM_b21287 0.10 -0.1
862,741 + SM_b21287 0.16 -1.6
862,741 + SM_b21287 0.16 +0.0
863,223 + SM_b21287 0.37 -1.0
863,223 + SM_b21287 0.37 +0.6
863,223 + SM_b21287 0.37 +1.5
863,223 + SM_b21287 0.37 +0.4
863,224 - SM_b21287 0.37 +0.2
863,352 + SM_b21287 0.43 +0.2
863,353 - SM_b21287 0.43 +0.2
863,556 + SM_b21287 0.51 -0.4
863,622 + SM_b21287 0.54 -0.6
863,763 + SM_b21287 0.60 -0.1
863,764 - SM_b21287 0.60 +2.6
863,764 - SM_b21287 0.60 -0.3
863,765 + SM_b21287 0.60 +0.4
863,821 - SM_b21287 0.63 +0.2
863,860 + SM_b21287 0.64 -0.6
863,860 + SM_b21287 0.64 +1.4
863,860 + SM_b21287 0.64 -1.1
863,873 + SM_b21287 0.65 -0.9
863,875 + SM_b21287 0.65 +0.6
863,875 + SM_b21287 0.65 -0.1
863,875 + SM_b21287 0.65 -0.6
863,875 + SM_b21287 0.65 +1.3
863,875 + SM_b21287 0.65 -1.4
863,876 - SM_b21287 0.65 +1.3
863,876 - SM_b21287 0.65 -0.3
863,876 - SM_b21287 0.65 -0.2
863,876 - SM_b21287 0.65 +1.3
863,876 - SM_b21287 0.65 +0.8
864,098 + SM_b21287 0.75 +0.6
864,098 + SM_b21287 0.75 +1.2
864,098 + SM_b21287 0.75 +0.1
864,099 - SM_b21287 0.75 +0.2
864,111 + SM_b21287 0.75 -0.1
864,112 - SM_b21287 0.75 +0.3
864,148 - SM_b21287 0.77 -0.8
864,201 + SM_b21287 0.79 -0.6
864,201 + SM_b21287 0.79 +0.6
864,204 + SM_b21287 0.79 +1.4
864,205 - SM_b21287 0.79 -0.1
864,262 - SM_b21287 0.82 -0.3
864,262 - SM_b21287 0.82 +0.8
864,282 - SM_b21287 0.82 +2.6
864,429 + SM_b21287 0.89 -0.3
864,429 + SM_b21287 0.89 +0.7
864,429 + SM_b21287 0.89 +0.0
864,429 + SM_b21287 0.89 -0.3
864,430 - SM_b21287 0.89 -0.1
864,608 + -2.3
864,747 + +2.4
864,748 - +0.6
865,085 + SM_b21288 0.42 -0.7
865,086 - SM_b21288 0.42 +0.2
865,086 - SM_b21288 0.42 -0.1
865,086 - SM_b21288 0.42 +0.8
865,086 - SM_b21288 0.42 -0.2
865,086 - SM_b21288 0.42 -0.0
865,344 - SM_b21288 0.72 -0.2
865,357 - SM_b21288 0.74 -0.4
865,357 - SM_b21288 0.74 -0.4
865,357 - SM_b21288 0.74 +0.1
865,510 - -1.7
865,583 + -0.3
865,583 + -0.9
865,583 + -0.7

Or see this region's nucleotide sequence