Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21220

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21218 and SM_b21219 are separated by 2 nucleotidesSM_b21219 and SM_b21220 overlap by 1 nucleotidesSM_b21220 and SM_b21221 are separated by 242 nucleotides SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) (from data), at 780,746 to 781,765 _b21218 SM_b21219: SM_b21219 - ABC transporter for D-Glucosamine, permease component 1 (from data), at 781,768 to 782,613 _b21219 SM_b21220: SM_b21220 - ABC transporter for D-Glucosamine, permease component 2 (from data), at 782,613 to 783,494 _b21220 SM_b21221: SM_b21221 - ABC transporter for D-Glucosamine, periplasmic substrate-binding protein (from data), at 783,737 to 784,975 _b21221 Position (kb) 782 783 784Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 781.758 kb on - strandat 781.758 kb on - strandat 781.821 kb on + strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.822 kb on - strandat 781.964 kb on + strand, within SM_b21219at 782.166 kb on - strand, within SM_b21219at 782.208 kb on - strand, within SM_b21219at 782.221 kb on - strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.222 kb on + strand, within SM_b21219at 782.223 kb on - strand, within SM_b21219at 782.223 kb on - strand, within SM_b21219at 782.223 kb on - strand, within SM_b21219at 782.256 kb on + strand, within SM_b21219at 782.256 kb on + strand, within SM_b21219at 782.256 kb on + strand, within SM_b21219at 782.257 kb on - strand, within SM_b21219at 782.257 kb on - strand, within SM_b21219at 782.257 kb on - strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.258 kb on + strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.259 kb on - strand, within SM_b21219at 782.831 kb on + strand, within SM_b21220at 782.831 kb on + strand, within SM_b21220at 782.832 kb on - strand, within SM_b21220at 782.832 kb on - strand, within SM_b21220at 782.869 kb on + strand, within SM_b21220at 782.870 kb on - strand, within SM_b21220at 783.058 kb on + strand, within SM_b21220at 783.059 kb on - strand, within SM_b21220at 783.118 kb on + strand, within SM_b21220at 783.118 kb on + strand, within SM_b21220at 783.118 kb on + strand, within SM_b21220at 783.118 kb on + strand, within SM_b21220at 783.119 kb on - strand, within SM_b21220at 783.119 kb on - strand, within SM_b21220at 783.119 kb on - strand, within SM_b21220at 783.331 kb on + strand, within SM_b21220at 783.332 kb on - strand, within SM_b21220at 783.332 kb on - strand, within SM_b21220at 783.529 kb on + strandat 783.530 kb on - strandat 783.843 kb on + strandat 783.867 kb on + strand, within SM_b21221at 783.867 kb on + strand, within SM_b21221at 783.867 kb on + strand, within SM_b21221at 783.940 kb on - strand, within SM_b21221at 784.003 kb on + strand, within SM_b21221at 784.003 kb on + strand, within SM_b21221at 784.014 kb on + strand, within SM_b21221at 784.015 kb on - strand, within SM_b21221at 784.173 kb on + strand, within SM_b21221at 784.173 kb on + strand, within SM_b21221at 784.173 kb on + strand, within SM_b21221at 784.173 kb on + strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.174 kb on - strand, within SM_b21221at 784.179 kb on + strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.180 kb on - strand, within SM_b21221at 784.229 kb on + strand, within SM_b21221at 784.229 kb on + strand, within SM_b21221at 784.229 kb on + strand, within SM_b21221at 784.230 kb on - strand, within SM_b21221at 784.268 kb on - strand, within SM_b21221at 784.281 kb on + strand, within SM_b21221at 784.282 kb on - strand, within SM_b21221at 784.282 kb on - strand, within SM_b21221at 784.296 kb on + strand, within SM_b21221at 784.296 kb on + strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221at 784.297 kb on - strand, within SM_b21221

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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781,758 - +0.8
781,758 - -2.2
781,821 + +0.5
781,822 - -1.6
781,822 - +0.0
781,822 - -0.7
781,822 - +1.1
781,822 - +0.2
781,822 - -0.5
781,964 + SM_b21219 0.23 -1.2
782,166 - SM_b21219 0.47 -0.7
782,208 - SM_b21219 0.52 -0.1
782,221 - SM_b21219 0.54 +0.3
782,222 + SM_b21219 0.54 -0.0
782,222 + SM_b21219 0.54 -0.2
782,222 + SM_b21219 0.54 +0.6
782,222 + SM_b21219 0.54 -0.6
782,222 + SM_b21219 0.54 -0.9
782,222 + SM_b21219 0.54 -1.5
782,222 + SM_b21219 0.54 -1.2
782,223 - SM_b21219 0.54 +0.2
782,223 - SM_b21219 0.54 -0.2
782,223 - SM_b21219 0.54 -0.5
782,256 + SM_b21219 0.58 +0.8
782,256 + SM_b21219 0.58 +0.1
782,256 + SM_b21219 0.58 -0.9
782,257 - SM_b21219 0.58 +1.8
782,257 - SM_b21219 0.58 +0.6
782,257 - SM_b21219 0.58 -0.5
782,258 + SM_b21219 0.58 -4.3
782,258 + SM_b21219 0.58 -0.4
782,258 + SM_b21219 0.58 -1.2
782,258 + SM_b21219 0.58 +0.3
782,258 + SM_b21219 0.58 -0.8
782,258 + SM_b21219 0.58 -0.7
782,259 - SM_b21219 0.58 -0.0
782,259 - SM_b21219 0.58 +0.6
782,259 - SM_b21219 0.58 +0.5
782,259 - SM_b21219 0.58 +2.2
782,259 - SM_b21219 0.58 -0.4
782,259 - SM_b21219 0.58 +3.3
782,259 - SM_b21219 0.58 +0.8
782,831 + SM_b21220 0.25 -2.0
782,831 + SM_b21220 0.25 +0.1
782,832 - SM_b21220 0.25 +1.5
782,832 - SM_b21220 0.25 +0.6
782,869 + SM_b21220 0.29 +1.1
782,870 - SM_b21220 0.29 -0.2
783,058 + SM_b21220 0.50 +0.5
783,059 - SM_b21220 0.51 +0.5
783,118 + SM_b21220 0.57 +0.2
783,118 + SM_b21220 0.57 +0.1
783,118 + SM_b21220 0.57 -0.0
783,118 + SM_b21220 0.57 -1.5
783,119 - SM_b21220 0.57 +0.8
783,119 - SM_b21220 0.57 -0.1
783,119 - SM_b21220 0.57 +0.4
783,331 + SM_b21220 0.81 -0.6
783,332 - SM_b21220 0.82 +1.9
783,332 - SM_b21220 0.82 +0.6
783,529 + +0.9
783,530 - +0.5
783,843 + -0.2
783,867 + SM_b21221 0.10 +1.0
783,867 + SM_b21221 0.10 +0.1
783,867 + SM_b21221 0.10 -1.2
783,940 - SM_b21221 0.16 +0.3
784,003 + SM_b21221 0.21 +0.8
784,003 + SM_b21221 0.21 -0.5
784,014 + SM_b21221 0.22 +3.6
784,015 - SM_b21221 0.22 -0.3
784,173 + SM_b21221 0.35 +0.2
784,173 + SM_b21221 0.35 -0.5
784,173 + SM_b21221 0.35 -2.8
784,173 + SM_b21221 0.35 +0.5
784,174 - SM_b21221 0.35 +0.1
784,174 - SM_b21221 0.35 -1.4
784,174 - SM_b21221 0.35 +0.0
784,174 - SM_b21221 0.35 -0.5
784,174 - SM_b21221 0.35 -0.5
784,179 + SM_b21221 0.36 +0.6
784,180 - SM_b21221 0.36 +0.2
784,180 - SM_b21221 0.36 +0.4
784,180 - SM_b21221 0.36 +0.1
784,180 - SM_b21221 0.36 -0.8
784,180 - SM_b21221 0.36 -0.4
784,229 + SM_b21221 0.40 +1.1
784,229 + SM_b21221 0.40 -0.7
784,229 + SM_b21221 0.40 -0.7
784,230 - SM_b21221 0.40 -1.1
784,268 - SM_b21221 0.43 -1.0
784,281 + SM_b21221 0.44 +0.5
784,282 - SM_b21221 0.44 -0.2
784,282 - SM_b21221 0.44 -0.1
784,296 + SM_b21221 0.45 +0.1
784,296 + SM_b21221 0.45 -0.2
784,297 - SM_b21221 0.45 -0.1
784,297 - SM_b21221 0.45 -0.1
784,297 - SM_b21221 0.45 -0.6
784,297 - SM_b21221 0.45 +0.2
784,297 - SM_b21221 0.45 -2.1
784,297 - SM_b21221 0.45 +0.4

Or see this region's nucleotide sequence