Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21161

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21160 and SM_b21161 are separated by 8 nucleotidesSM_b21161 and SM_b21162 are separated by 73 nucleotides SM_b21160: SM_b21160 - beta-N-acetylhexosaminidase, at 903,322 to 905,241 _b21160 SM_b21161: SM_b21161 - hypothetical protein, at 905,250 to 906,683 _b21161 SM_b21162: SM_b21162 - integral membrane transporter protein, at 906,757 to 907,971 _b21162 Position (kb) 905 906 907Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 904.341 kb on + strand, within SM_b21160at 904.341 kb on + strand, within SM_b21160at 904.341 kb on + strand, within SM_b21160at 904.341 kb on + strand, within SM_b21160at 904.342 kb on - strand, within SM_b21160at 904.342 kb on - strand, within SM_b21160at 904.342 kb on - strandat 904.387 kb on + strand, within SM_b21160at 904.388 kb on - strand, within SM_b21160at 904.463 kb on + strand, within SM_b21160at 904.535 kb on - strand, within SM_b21160at 904.591 kb on + strand, within SM_b21160at 904.591 kb on + strand, within SM_b21160at 904.602 kb on - strand, within SM_b21160at 904.645 kb on + strand, within SM_b21160at 904.645 kb on + strand, within SM_b21160at 904.646 kb on - strand, within SM_b21160at 904.646 kb on - strand, within SM_b21160at 904.647 kb on + strand, within SM_b21160at 904.647 kb on + strand, within SM_b21160at 904.647 kb on + strand, within SM_b21160at 904.648 kb on - strand, within SM_b21160at 904.756 kb on + strand, within SM_b21160at 904.757 kb on - strand, within SM_b21160at 904.942 kb on + strand, within SM_b21160at 904.943 kb on - strand, within SM_b21160at 904.943 kb on - strand, within SM_b21160at 904.945 kb on + strand, within SM_b21160at 904.946 kb on - strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.023 kb on + strand, within SM_b21160at 905.024 kb on - strand, within SM_b21160at 905.024 kb on - strand, within SM_b21160at 905.024 kb on - strand, within SM_b21160at 905.024 kb on - strand, within SM_b21160at 905.029 kb on + strand, within SM_b21160at 905.029 kb on + strand, within SM_b21160at 905.292 kb on + strandat 905.293 kb on - strandat 905.361 kb on + strandat 905.362 kb on - strandat 905.362 kb on - strandat 905.451 kb on + strand, within SM_b21161at 905.514 kb on + strand, within SM_b21161at 905.515 kb on - strand, within SM_b21161at 905.625 kb on + strand, within SM_b21161at 905.626 kb on - strand, within SM_b21161at 905.672 kb on + strand, within SM_b21161at 905.686 kb on - strand, within SM_b21161at 905.703 kb on - strand, within SM_b21161at 905.709 kb on - strand, within SM_b21161at 905.854 kb on - strand, within SM_b21161at 905.854 kb on - strand, within SM_b21161at 905.916 kb on + strand, within SM_b21161at 906.109 kb on + strand, within SM_b21161at 906.401 kb on - strand, within SM_b21161at 906.401 kb on - strand, within SM_b21161at 906.433 kb on - strand, within SM_b21161at 906.437 kb on + strand, within SM_b21161at 906.437 kb on + strand, within SM_b21161at 906.438 kb on - strand, within SM_b21161at 906.438 kb on - strand, within SM_b21161at 906.438 kb on - strand, within SM_b21161at 906.438 kb on - strand, within SM_b21161at 906.507 kb on + strand, within SM_b21161at 906.690 kb on - strandat 906.988 kb on + strand, within SM_b21162at 907.046 kb on - strand, within SM_b21162at 907.133 kb on - strand, within SM_b21162at 907.403 kb on + strand, within SM_b21162at 907.404 kb on - strand, within SM_b21162at 907.404 kb on - strand, within SM_b21162at 907.406 kb on + strand, within SM_b21162at 907.406 kb on + strand, within SM_b21162at 907.543 kb on - strand, within SM_b21162at 907.608 kb on + strand, within SM_b21162at 907.609 kb on - strand, within SM_b21162at 907.609 kb on - strand, within SM_b21162at 907.638 kb on - strand, within SM_b21162at 907.639 kb on + strand, within SM_b21162at 907.639 kb on + strand, within SM_b21162at 907.640 kb on - strand, within SM_b21162at 907.640 kb on - strand, within SM_b21162at 907.640 kb on - strand, within SM_b21162at 907.640 kb on - strand, within SM_b21162

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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904,341 + SM_b21160 0.53 -1.5
904,341 + SM_b21160 0.53 +0.1
904,341 + SM_b21160 0.53 -0.3
904,341 + SM_b21160 0.53 -0.6
904,342 - SM_b21160 0.53 +0.2
904,342 - SM_b21160 0.53 -0.5
904,342 - -0.7
904,387 + SM_b21160 0.55 -0.0
904,388 - SM_b21160 0.56 +0.3
904,463 + SM_b21160 0.59 -0.1
904,535 - SM_b21160 0.63 -0.3
904,591 + SM_b21160 0.66 -1.4
904,591 + SM_b21160 0.66 +0.8
904,602 - SM_b21160 0.67 -1.3
904,645 + SM_b21160 0.69 -0.0
904,645 + SM_b21160 0.69 -0.4
904,646 - SM_b21160 0.69 -0.4
904,646 - SM_b21160 0.69 +0.5
904,647 + SM_b21160 0.69 -0.0
904,647 + SM_b21160 0.69 -0.6
904,647 + SM_b21160 0.69 -0.6
904,648 - SM_b21160 0.69 +0.0
904,756 + SM_b21160 0.75 +2.6
904,757 - SM_b21160 0.75 -1.1
904,942 + SM_b21160 0.84 -0.1
904,943 - SM_b21160 0.84 -0.1
904,943 - SM_b21160 0.84 +0.4
904,945 + SM_b21160 0.85 -1.0
904,946 - SM_b21160 0.85 -1.0
905,023 + SM_b21160 0.89 +1.9
905,023 + SM_b21160 0.89 -0.2
905,023 + SM_b21160 0.89 +0.3
905,023 + SM_b21160 0.89 +1.6
905,023 + SM_b21160 0.89 +0.8
905,023 + SM_b21160 0.89 -0.4
905,024 - SM_b21160 0.89 -0.0
905,024 - SM_b21160 0.89 -0.9
905,024 - SM_b21160 0.89 -0.3
905,024 - SM_b21160 0.89 -0.3
905,029 + SM_b21160 0.89 +0.5
905,029 + SM_b21160 0.89 +0.5
905,292 + -2.1
905,293 - -0.9
905,361 + -0.4
905,362 - +0.3
905,362 - -2.8
905,451 + SM_b21161 0.14 -0.7
905,514 + SM_b21161 0.18 -0.9
905,515 - SM_b21161 0.18 +0.5
905,625 + SM_b21161 0.26 -0.3
905,626 - SM_b21161 0.26 +0.9
905,672 + SM_b21161 0.29 -0.1
905,686 - SM_b21161 0.30 -1.5
905,703 - SM_b21161 0.32 +0.3
905,709 - SM_b21161 0.32 +0.1
905,854 - SM_b21161 0.42 -2.6
905,854 - SM_b21161 0.42 +2.4
905,916 + SM_b21161 0.46 -1.3
906,109 + SM_b21161 0.60 -0.7
906,401 - SM_b21161 0.80 -0.5
906,401 - SM_b21161 0.80 +0.4
906,433 - SM_b21161 0.82 +0.3
906,437 + SM_b21161 0.83 -1.5
906,437 + SM_b21161 0.83 -0.5
906,438 - SM_b21161 0.83 -0.0
906,438 - SM_b21161 0.83 +0.0
906,438 - SM_b21161 0.83 -1.3
906,438 - SM_b21161 0.83 -0.1
906,507 + SM_b21161 0.88 -0.9
906,690 - +1.6
906,988 + SM_b21162 0.19 -0.9
907,046 - SM_b21162 0.24 +0.3
907,133 - SM_b21162 0.31 +0.0
907,403 + SM_b21162 0.53 -0.1
907,404 - SM_b21162 0.53 +0.4
907,404 - SM_b21162 0.53 +1.0
907,406 + SM_b21162 0.53 +1.3
907,406 + SM_b21162 0.53 -1.7
907,543 - SM_b21162 0.65 -0.9
907,608 + SM_b21162 0.70 -0.9
907,609 - SM_b21162 0.70 +0.2
907,609 - SM_b21162 0.70 -0.1
907,638 - SM_b21162 0.73 +0.2
907,639 + SM_b21162 0.73 -0.1
907,639 + SM_b21162 0.73 +0.8
907,640 - SM_b21162 0.73 -0.7
907,640 - SM_b21162 0.73 -0.3
907,640 - SM_b21162 0.73 +0.2
907,640 - SM_b21162 0.73 -0.3

Or see this region's nucleotide sequence