Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21159

Experiment: Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21157 and SM_b21158 are separated by 20 nucleotidesSM_b21158 and SM_b21159 are separated by 19 nucleotidesSM_b21159 and SM_b21160 are separated by 24 nucleotides SM_b21157: SM_b21157 - translation initiation inhibitor protein, at 901,228 to 901,617 _b21157 SM_b21158: SM_b21158 - transcriptional regulator, at 901,638 to 902,501 _b21158 SM_b21159: SM_b21159 - short-chain dehydrogenase, at 902,521 to 903,297 _b21159 SM_b21160: SM_b21160 - beta-N-acetylhexosaminidase, at 903,322 to 905,241 _b21160 Position (kb) 902 903 904Strain fitness (log2 ratio) -2 -1 0 1at 901.547 kb on + strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.548 kb on - strand, within SM_b21157at 901.597 kb on + strandat 901.598 kb on - strandat 901.598 kb on - strandat 901.644 kb on - strandat 901.861 kb on - strand, within SM_b21158at 901.861 kb on - strand, within SM_b21158at 901.982 kb on - strand, within SM_b21158at 902.028 kb on + strand, within SM_b21158at 902.028 kb on + strand, within SM_b21158at 902.028 kb on + strand, within SM_b21158at 902.029 kb on - strand, within SM_b21158at 902.171 kb on + strand, within SM_b21158at 902.171 kb on + strand, within SM_b21158at 902.261 kb on + strand, within SM_b21158at 902.261 kb on + strand, within SM_b21158at 902.337 kb on + strand, within SM_b21158at 902.337 kb on + strand, within SM_b21158at 902.338 kb on - strand, within SM_b21158at 902.357 kb on + strand, within SM_b21158at 902.358 kb on - strand, within SM_b21158at 902.365 kb on - strand, within SM_b21158at 902.962 kb on + strand, within SM_b21159at 903.130 kb on + strand, within SM_b21159at 903.292 kb on + strandat 903.442 kb on + strandat 903.442 kb on + strandat 903.443 kb on - strandat 903.443 kb on - strandat 903.443 kb on - strandat 903.632 kb on - strand, within SM_b21160at 903.632 kb on - strand, within SM_b21160at 903.716 kb on + strand, within SM_b21160at 903.873 kb on - strand, within SM_b21160at 903.873 kb on - strand, within SM_b21160at 903.979 kb on + strand, within SM_b21160at 904.018 kb on + strand, within SM_b21160at 904.042 kb on + strand, within SM_b21160at 904.141 kb on + strand, within SM_b21160at 904.141 kb on + strand, within SM_b21160at 904.142 kb on - strand, within SM_b21160at 904.142 kb on - strand, within SM_b21160at 904.215 kb on + strand, within SM_b21160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
remove
901,547 + SM_b21157 0.82 -0.4
901,548 - SM_b21157 0.82 +0.7
901,548 - SM_b21157 0.82 +0.3
901,548 - SM_b21157 0.82 -0.5
901,597 + -0.0
901,598 - +0.2
901,598 - +0.7
901,644 - +1.3
901,861 - SM_b21158 0.26 +0.7
901,861 - SM_b21158 0.26 -0.7
901,982 - SM_b21158 0.40 +1.1
902,028 + SM_b21158 0.45 +0.9
902,028 + SM_b21158 0.45 +0.3
902,028 + SM_b21158 0.45 +0.4
902,029 - SM_b21158 0.45 +0.2
902,171 + SM_b21158 0.62 +0.1
902,171 + SM_b21158 0.62 +0.6
902,261 + SM_b21158 0.72 -1.2
902,261 + SM_b21158 0.72 +0.1
902,337 + SM_b21158 0.81 -1.3
902,337 + SM_b21158 0.81 +0.9
902,338 - SM_b21158 0.81 -0.5
902,357 + SM_b21158 0.83 +0.9
902,358 - SM_b21158 0.83 +0.2
902,365 - SM_b21158 0.84 +0.4
902,962 + SM_b21159 0.57 +1.7
903,130 + SM_b21159 0.78 -0.1
903,292 + +0.0
903,442 + -0.2
903,442 + +0.3
903,443 - -0.1
903,443 - +0.3
903,443 - +0.1
903,632 - SM_b21160 0.16 +0.3
903,632 - SM_b21160 0.16 -2.1
903,716 + SM_b21160 0.21 -2.3
903,873 - SM_b21160 0.29 -0.1
903,873 - SM_b21160 0.29 -0.7
903,979 + SM_b21160 0.34 -0.1
904,018 + SM_b21160 0.36 +0.1
904,042 + SM_b21160 0.38 +0.4
904,141 + SM_b21160 0.43 +0.2
904,141 + SM_b21160 0.43 +1.0
904,142 - SM_b21160 0.43 -0.0
904,142 - SM_b21160 0.43 -0.3
904,215 + SM_b21160 0.47 +0.3

Or see this region's nucleotide sequence