Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21079

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21078 and SM_b21079 are separated by 428 nucleotidesSM_b21079 and SM_b21080 are separated by 300 nucleotides SM_b21078: SM_b21078 - glycosyltransferase, at 714,876 to 716,084 _b21078 SM_b21079: SM_b21079 - transcriptional regulator, at 716,513 to 717,244 _b21079 SM_b21080: SM_b21080 - response regulator protein, at 717,545 to 718,369 _b21080 Position (kb) 716 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 715.599 kb on + strand, within SM_b21078at 715.599 kb on + strand, within SM_b21078at 715.665 kb on - strand, within SM_b21078at 715.912 kb on - strand, within SM_b21078at 715.965 kb on - strandat 715.978 kb on + strandat 715.978 kb on + strandat 715.979 kb on - strandat 715.979 kb on - strandat 715.979 kb on - strandat 715.979 kb on - strandat 716.049 kb on + strandat 716.077 kb on + strandat 716.077 kb on + strandat 716.077 kb on + strandat 716.077 kb on + strandat 716.077 kb on + strandat 716.077 kb on + strandat 716.078 kb on - strandat 716.078 kb on - strandat 716.082 kb on + strandat 716.236 kb on - strandat 716.336 kb on + strandat 716.337 kb on - strandat 716.337 kb on - strandat 716.337 kb on - strandat 716.337 kb on - strandat 716.438 kb on - strandat 716.477 kb on + strandat 716.478 kb on - strandat 716.480 kb on + strandat 716.481 kb on - strandat 716.582 kb on - strandat 716.587 kb on + strand, within SM_b21079at 716.588 kb on - strand, within SM_b21079at 716.588 kb on - strand, within SM_b21079at 716.588 kb on - strand, within SM_b21079at 716.588 kb on - strand, within SM_b21079at 716.627 kb on + strand, within SM_b21079at 716.648 kb on - strand, within SM_b21079at 716.769 kb on + strand, within SM_b21079at 716.769 kb on + strand, within SM_b21079at 716.769 kb on + strand, within SM_b21079at 716.832 kb on + strand, within SM_b21079at 716.832 kb on + strand, within SM_b21079at 717.012 kb on + strand, within SM_b21079at 717.013 kb on - strand, within SM_b21079at 717.013 kb on - strand, within SM_b21079at 717.065 kb on + strand, within SM_b21079at 717.065 kb on + strand, within SM_b21079at 717.066 kb on - strand, within SM_b21079at 717.140 kb on + strandat 717.369 kb on - strandat 717.369 kb on - strandat 717.543 kb on + strandat 717.562 kb on + strandat 717.613 kb on + strandat 717.614 kb on - strandat 717.643 kb on + strandat 717.643 kb on + strand, within SM_b21080at 717.643 kb on + strand, within SM_b21080at 717.646 kb on + strand, within SM_b21080at 717.646 kb on + strand, within SM_b21080at 717.658 kb on + strand, within SM_b21080at 717.658 kb on + strand, within SM_b21080at 717.659 kb on - strand, within SM_b21080at 717.748 kb on + strand, within SM_b21080at 717.765 kb on + strand, within SM_b21080at 717.766 kb on - strand, within SM_b21080at 717.986 kb on + strand, within SM_b21080at 717.986 kb on + strand, within SM_b21080at 717.986 kb on + strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.987 kb on - strand, within SM_b21080at 717.988 kb on + strand, within SM_b21080at 717.988 kb on + strand, within SM_b21080at 717.988 kb on + strand, within SM_b21080at 717.989 kb on - strand, within SM_b21080at 718.053 kb on + strand, within SM_b21080at 718.053 kb on + strand, within SM_b21080at 718.123 kb on + strand, within SM_b21080at 718.124 kb on - strand, within SM_b21080at 718.203 kb on - strand, within SM_b21080at 718.231 kb on - strand, within SM_b21080

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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715,599 + SM_b21078 0.60 +0.3
715,599 + SM_b21078 0.60 -1.2
715,665 - SM_b21078 0.65 -0.3
715,912 - SM_b21078 0.86 +0.0
715,965 - +2.4
715,978 + +1.8
715,978 + -1.6
715,979 - +0.3
715,979 - -0.2
715,979 - -0.4
715,979 - -1.3
716,049 + +1.4
716,077 + +0.3
716,077 + +0.3
716,077 + +0.5
716,077 + +0.5
716,077 + -0.2
716,077 + -1.1
716,078 - -3.0
716,078 - -0.5
716,082 + -0.5
716,236 - -0.0
716,336 + -0.7
716,337 - +0.4
716,337 - +0.3
716,337 - -0.4
716,337 - -1.2
716,438 - +2.3
716,477 + -0.3
716,478 - -1.1
716,480 + -0.2
716,481 - +1.3
716,582 - +0.3
716,587 + SM_b21079 0.10 +0.0
716,588 - SM_b21079 0.10 -2.3
716,588 - SM_b21079 0.10 -1.4
716,588 - SM_b21079 0.10 +0.2
716,588 - SM_b21079 0.10 +0.0
716,627 + SM_b21079 0.16 -0.8
716,648 - SM_b21079 0.18 -1.4
716,769 + SM_b21079 0.35 -0.1
716,769 + SM_b21079 0.35 -0.5
716,769 + SM_b21079 0.35 -0.2
716,832 + SM_b21079 0.44 +0.1
716,832 + SM_b21079 0.44 -0.4
717,012 + SM_b21079 0.68 +0.1
717,013 - SM_b21079 0.68 -1.0
717,013 - SM_b21079 0.68 +0.6
717,065 + SM_b21079 0.75 -2.1
717,065 + SM_b21079 0.75 -0.4
717,066 - SM_b21079 0.76 -0.6
717,140 + +3.2
717,369 - +0.6
717,369 - +0.1
717,543 + -1.4
717,562 + +1.0
717,613 + +0.9
717,614 - -0.0
717,643 + -0.5
717,643 + SM_b21080 0.12 -0.2
717,643 + SM_b21080 0.12 -1.6
717,646 + SM_b21080 0.12 +0.4
717,646 + SM_b21080 0.12 +0.4
717,658 + SM_b21080 0.14 +0.5
717,658 + SM_b21080 0.14 -0.5
717,659 - SM_b21080 0.14 +0.5
717,748 + SM_b21080 0.25 +0.6
717,765 + SM_b21080 0.27 -0.1
717,766 - SM_b21080 0.27 +1.7
717,986 + SM_b21080 0.53 +0.5
717,986 + SM_b21080 0.53 -0.9
717,986 + SM_b21080 0.53 +0.0
717,987 - SM_b21080 0.54 +0.5
717,987 - SM_b21080 0.54 -0.2
717,987 - SM_b21080 0.54 -0.3
717,987 - SM_b21080 0.54 -0.3
717,988 + SM_b21080 0.54 -0.7
717,988 + SM_b21080 0.54 -0.2
717,988 + SM_b21080 0.54 +0.8
717,989 - SM_b21080 0.54 +0.2
718,053 + SM_b21080 0.62 -0.8
718,053 + SM_b21080 0.62 +1.4
718,123 + SM_b21080 0.70 +0.8
718,124 - SM_b21080 0.70 -0.7
718,203 - SM_b21080 0.80 +1.8
718,231 - SM_b21080 0.83 +1.1

Or see this region's nucleotide sequence