Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20990 and SM_b20991 are separated by 128 nucleotides SM_b20991 and SM_b20992 are separated by 133 nucleotides
SM_b20990: SM_b20990 - membrane protein necessary for nodulation competitiveness, at 1,223,683 to 1,225,119
_b20990
SM_b20991: SM_b20991 - hypothetical protein, at 1,225,248 to 1,226,711
_b20991
SM_b20992: SM_b20992 - hypothetical protein, at 1,226,845 to 1,228,248
_b20992
Position (kb)
1225
1226
1227 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1224.249 kb on - strand, within SM_b20990 at 1224.741 kb on - strand, within SM_b20990 at 1224.747 kb on + strand at 1224.747 kb on + strand, within SM_b20990 at 1224.748 kb on - strand, within SM_b20990 at 1224.748 kb on - strand, within SM_b20990 at 1224.749 kb on + strand, within SM_b20990 at 1224.749 kb on + strand, within SM_b20990 at 1224.749 kb on + strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.750 kb on - strand, within SM_b20990 at 1224.830 kb on - strand, within SM_b20990 at 1224.830 kb on - strand, within SM_b20990 at 1224.830 kb on - strand, within SM_b20990 at 1224.849 kb on + strand, within SM_b20990 at 1224.850 kb on - strand, within SM_b20990 at 1224.953 kb on - strand, within SM_b20990 at 1225.112 kb on - strand at 1225.166 kb on + strand at 1225.166 kb on + strand at 1225.167 kb on - strand at 1225.169 kb on - strand at 1225.169 kb on - strand at 1225.501 kb on + strand, within SM_b20991 at 1225.501 kb on + strand, within SM_b20991 at 1225.501 kb on + strand, within SM_b20991 at 1225.502 kb on - strand, within SM_b20991 at 1225.502 kb on - strand, within SM_b20991 at 1225.632 kb on - strand, within SM_b20991 at 1225.661 kb on + strand, within SM_b20991 at 1225.661 kb on + strand, within SM_b20991 at 1225.662 kb on - strand, within SM_b20991 at 1225.662 kb on - strand, within SM_b20991 at 1225.689 kb on + strand, within SM_b20991 at 1225.689 kb on + strand, within SM_b20991 at 1225.689 kb on + strand, within SM_b20991 at 1225.690 kb on - strand, within SM_b20991 at 1225.690 kb on - strand, within SM_b20991 at 1225.868 kb on + strand, within SM_b20991 at 1225.868 kb on + strand, within SM_b20991 at 1225.868 kb on + strand at 1225.868 kb on + strand, within SM_b20991 at 1225.869 kb on - strand, within SM_b20991 at 1225.869 kb on - strand, within SM_b20991 at 1225.869 kb on - strand, within SM_b20991 at 1225.960 kb on + strand, within SM_b20991 at 1226.155 kb on + strand, within SM_b20991 at 1226.155 kb on + strand, within SM_b20991 at 1226.155 kb on + strand, within SM_b20991 at 1226.156 kb on - strand, within SM_b20991 at 1226.156 kb on - strand, within SM_b20991 at 1226.247 kb on + strand, within SM_b20991 at 1226.368 kb on + strand, within SM_b20991 at 1226.395 kb on + strand, within SM_b20991 at 1226.395 kb on + strand, within SM_b20991 at 1226.541 kb on - strand, within SM_b20991 at 1226.545 kb on + strand, within SM_b20991 at 1226.545 kb on + strand, within SM_b20991 at 1226.545 kb on + strand, within SM_b20991 at 1226.546 kb on - strand, within SM_b20991 at 1226.546 kb on - strand, within SM_b20991 at 1226.711 kb on + strand at 1226.712 kb on - strand at 1226.781 kb on - strand at 1226.781 kb on - strand at 1226.839 kb on + strand at 1226.839 kb on + strand at 1226.840 kb on - strand at 1226.883 kb on + strand at 1226.901 kb on - strand at 1226.923 kb on + strand at 1226.923 kb on + strand at 1226.924 kb on - strand at 1227.028 kb on + strand, within SM_b20992 at 1227.094 kb on - strand, within SM_b20992 at 1227.299 kb on + strand, within SM_b20992 at 1227.299 kb on + strand, within SM_b20992 at 1227.516 kb on + strand, within SM_b20992 at 1227.666 kb on + strand, within SM_b20992
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,224,249 - SM_b20990 0.39 -1.0 1,224,741 - SM_b20990 0.74 -1.4 1,224,747 + +1.4 1,224,747 + SM_b20990 0.74 -1.3 1,224,748 - SM_b20990 0.74 +0.6 1,224,748 - SM_b20990 0.74 -2.1 1,224,749 + SM_b20990 0.74 -0.5 1,224,749 + SM_b20990 0.74 +0.2 1,224,749 + SM_b20990 0.74 +0.2 1,224,750 - SM_b20990 0.74 -0.1 1,224,750 - SM_b20990 0.74 +0.5 1,224,750 - SM_b20990 0.74 -0.2 1,224,750 - SM_b20990 0.74 -1.0 1,224,750 - SM_b20990 0.74 +0.1 1,224,750 - SM_b20990 0.74 +1.2 1,224,750 - SM_b20990 0.74 -0.4 1,224,750 - SM_b20990 0.74 +0.1 1,224,830 - SM_b20990 0.80 -0.2 1,224,830 - SM_b20990 0.80 +1.5 1,224,830 - SM_b20990 0.80 -0.3 1,224,849 + SM_b20990 0.81 -0.2 1,224,850 - SM_b20990 0.81 +2.1 1,224,953 - SM_b20990 0.88 -1.3 1,225,112 - +0.9 1,225,166 + +0.1 1,225,166 + -0.7 1,225,167 - +0.6 1,225,169 - -1.1 1,225,169 - +0.6 1,225,501 + SM_b20991 0.17 -0.3 1,225,501 + SM_b20991 0.17 +0.3 1,225,501 + SM_b20991 0.17 -0.4 1,225,502 - SM_b20991 0.17 -0.7 1,225,502 - SM_b20991 0.17 -0.1 1,225,632 - SM_b20991 0.26 +0.0 1,225,661 + SM_b20991 0.28 +0.1 1,225,661 + SM_b20991 0.28 +0.5 1,225,662 - SM_b20991 0.28 +0.5 1,225,662 - SM_b20991 0.28 -0.8 1,225,689 + SM_b20991 0.30 +0.2 1,225,689 + SM_b20991 0.30 +0.5 1,225,689 + SM_b20991 0.30 -0.8 1,225,690 - SM_b20991 0.30 +1.1 1,225,690 - SM_b20991 0.30 -1.0 1,225,868 + SM_b20991 0.42 -0.7 1,225,868 + SM_b20991 0.42 -0.1 1,225,868 + +0.9 1,225,868 + SM_b20991 0.42 -0.9 1,225,869 - SM_b20991 0.42 -0.9 1,225,869 - SM_b20991 0.42 -0.9 1,225,869 - SM_b20991 0.42 +0.1 1,225,960 + SM_b20991 0.49 -2.5 1,226,155 + SM_b20991 0.62 -0.6 1,226,155 + SM_b20991 0.62 -0.4 1,226,155 + SM_b20991 0.62 +0.1 1,226,156 - SM_b20991 0.62 -0.2 1,226,156 - SM_b20991 0.62 -0.6 1,226,247 + SM_b20991 0.68 -0.8 1,226,368 + SM_b20991 0.77 +0.0 1,226,395 + SM_b20991 0.78 +0.3 1,226,395 + SM_b20991 0.78 +0.1 1,226,541 - SM_b20991 0.88 -1.6 1,226,545 + SM_b20991 0.89 -2.1 1,226,545 + SM_b20991 0.89 +0.4 1,226,545 + SM_b20991 0.89 -0.3 1,226,546 - SM_b20991 0.89 +0.3 1,226,546 - SM_b20991 0.89 +0.1 1,226,711 + -0.1 1,226,712 - +1.0 1,226,781 - -0.0 1,226,781 - -0.2 1,226,839 + -0.1 1,226,839 + -1.0 1,226,840 - +0.8 1,226,883 + +1.4 1,226,901 - +0.3 1,226,923 + -0.1 1,226,923 + -3.5 1,226,924 - -0.7 1,227,028 + SM_b20992 0.13 +0.2 1,227,094 - SM_b20992 0.18 -1.2 1,227,299 + SM_b20992 0.32 +0.0 1,227,299 + SM_b20992 0.32 -4.4 1,227,516 + SM_b20992 0.48 -2.2 1,227,666 + SM_b20992 0.58 -0.1
Or see this region's nucleotide sequence