Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20979 and SM_b20980 overlap by 4 nucleotides SM_b20980 and SM_b20981 are separated by 181 nucleotides
SM_b20979: SM_b20979 - large C4-dicarboxylate uptake permease, DedA family protein, at 1,211,593 to 1,212,906
_b20979
SM_b20980: SM_b20980 - small C4-dicarboxylate uptake permease, at 1,212,903 to 1,213,415
_b20980
SM_b20981: SM_b20981 - C4-dicarboxylate transporter substrate-binding protein precursor, at 1,213,597 to 1,214,574
_b20981
Position (kb)
1212
1213
1214 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1212.017 kb on + strand, within SM_b20979 at 1212.149 kb on + strand, within SM_b20979 at 1212.302 kb on + strand at 1212.303 kb on - strand, within SM_b20979 at 1212.303 kb on - strand, within SM_b20979 at 1212.326 kb on + strand, within SM_b20979 at 1212.326 kb on + strand, within SM_b20979 at 1212.327 kb on - strand, within SM_b20979 at 1212.327 kb on - strand, within SM_b20979 at 1212.367 kb on + strand, within SM_b20979 at 1212.367 kb on + strand, within SM_b20979 at 1212.368 kb on - strand, within SM_b20979 at 1212.368 kb on - strand, within SM_b20979 at 1212.426 kb on + strand, within SM_b20979 at 1212.574 kb on - strand, within SM_b20979 at 1212.574 kb on - strand, within SM_b20979 at 1212.661 kb on + strand, within SM_b20979 at 1212.793 kb on - strand at 1212.899 kb on - strand at 1212.899 kb on - strand at 1212.899 kb on - strand at 1212.906 kb on + strand at 1213.006 kb on + strand, within SM_b20980 at 1213.040 kb on + strand, within SM_b20980 at 1213.040 kb on + strand, within SM_b20980 at 1213.040 kb on + strand, within SM_b20980 at 1213.041 kb on - strand, within SM_b20980 at 1213.041 kb on - strand, within SM_b20980 at 1213.041 kb on - strand, within SM_b20980 at 1213.117 kb on + strand, within SM_b20980 at 1213.118 kb on - strand, within SM_b20980 at 1213.118 kb on - strand, within SM_b20980 at 1213.232 kb on - strand, within SM_b20980 at 1213.232 kb on - strand, within SM_b20980 at 1213.259 kb on - strand, within SM_b20980 at 1213.259 kb on - strand, within SM_b20980 at 1213.259 kb on - strand, within SM_b20980 at 1213.259 kb on - strand, within SM_b20980 at 1213.289 kb on - strand, within SM_b20980 at 1213.628 kb on + strand at 1213.628 kb on + strand at 1213.629 kb on - strand at 1213.629 kb on - strand at 1213.629 kb on - strand at 1213.629 kb on - strand at 1213.629 kb on - strand at 1213.661 kb on + strand at 1213.746 kb on - strand, within SM_b20981 at 1213.746 kb on - strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.991 kb on + strand, within SM_b20981 at 1213.992 kb on - strand, within SM_b20981 at 1213.992 kb on - strand, within SM_b20981 at 1214.030 kb on + strand, within SM_b20981 at 1214.030 kb on + strand, within SM_b20981 at 1214.030 kb on + strand, within SM_b20981 at 1214.031 kb on - strand, within SM_b20981 at 1214.031 kb on - strand, within SM_b20981 at 1214.204 kb on + strand, within SM_b20981 at 1214.205 kb on - strand, within SM_b20981 at 1214.205 kb on - strand, within SM_b20981 at 1214.250 kb on - strand, within SM_b20981 at 1214.250 kb on - strand, within SM_b20981 at 1214.255 kb on + strand, within SM_b20981 at 1214.255 kb on + strand, within SM_b20981 at 1214.255 kb on + strand, within SM_b20981 at 1214.256 kb on - strand, within SM_b20981
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,212,017 + SM_b20979 0.32 +0.6 1,212,149 + SM_b20979 0.42 -0.1 1,212,302 + +1.0 1,212,303 - SM_b20979 0.54 -0.6 1,212,303 - SM_b20979 0.54 -0.2 1,212,326 + SM_b20979 0.56 -0.6 1,212,326 + SM_b20979 0.56 -4.4 1,212,327 - SM_b20979 0.56 +1.8 1,212,327 - SM_b20979 0.56 -1.2 1,212,367 + SM_b20979 0.59 -0.4 1,212,367 + SM_b20979 0.59 -0.1 1,212,368 - SM_b20979 0.59 -0.2 1,212,368 - SM_b20979 0.59 +0.1 1,212,426 + SM_b20979 0.63 +0.1 1,212,574 - SM_b20979 0.75 +0.0 1,212,574 - SM_b20979 0.75 -2.6 1,212,661 + SM_b20979 0.81 +1.0 1,212,793 - +0.4 1,212,899 - -0.5 1,212,899 - +0.5 1,212,899 - -0.3 1,212,906 + +1.5 1,213,006 + SM_b20980 0.20 +0.5 1,213,040 + SM_b20980 0.27 -0.1 1,213,040 + SM_b20980 0.27 +0.2 1,213,040 + SM_b20980 0.27 +0.8 1,213,041 - SM_b20980 0.27 +0.8 1,213,041 - SM_b20980 0.27 -0.5 1,213,041 - SM_b20980 0.27 +1.0 1,213,117 + SM_b20980 0.42 +1.4 1,213,118 - SM_b20980 0.42 +1.0 1,213,118 - SM_b20980 0.42 +0.6 1,213,232 - SM_b20980 0.64 +0.1 1,213,232 - SM_b20980 0.64 +0.0 1,213,259 - SM_b20980 0.69 -0.0 1,213,259 - SM_b20980 0.69 +0.4 1,213,259 - SM_b20980 0.69 -0.4 1,213,259 - SM_b20980 0.69 -0.4 1,213,289 - SM_b20980 0.75 -0.3 1,213,628 + -0.7 1,213,628 + -0.0 1,213,629 - -0.2 1,213,629 - -0.2 1,213,629 - -0.4 1,213,629 - -0.3 1,213,629 - -0.2 1,213,661 + +0.4 1,213,746 - SM_b20981 0.15 -0.0 1,213,746 - SM_b20981 0.15 +1.5 1,213,991 + SM_b20981 0.40 -0.5 1,213,991 + SM_b20981 0.40 -0.1 1,213,991 + SM_b20981 0.40 +3.0 1,213,991 + SM_b20981 0.40 +0.1 1,213,991 + SM_b20981 0.40 +0.3 1,213,991 + SM_b20981 0.40 -1.0 1,213,991 + SM_b20981 0.40 -0.1 1,213,992 - SM_b20981 0.40 +4.1 1,213,992 - SM_b20981 0.40 -1.1 1,214,030 + SM_b20981 0.44 -0.5 1,214,030 + SM_b20981 0.44 -0.3 1,214,030 + SM_b20981 0.44 +1.0 1,214,031 - SM_b20981 0.44 +2.0 1,214,031 - SM_b20981 0.44 +0.6 1,214,204 + SM_b20981 0.62 -0.3 1,214,205 - SM_b20981 0.62 -0.8 1,214,205 - SM_b20981 0.62 +0.7 1,214,250 - SM_b20981 0.67 +0.3 1,214,250 - SM_b20981 0.67 +1.4 1,214,255 + SM_b20981 0.67 -0.4 1,214,255 + SM_b20981 0.67 +2.0 1,214,255 + SM_b20981 0.67 +1.3 1,214,256 - SM_b20981 0.67 -0.6
Or see this region's nucleotide sequence