Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20926

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20925 and SM_b20926 are separated by 121 nucleotidesSM_b20926 and SM_b20927 are separated by 8 nucleotidesSM_b20927 and SM_b20928 are separated by 174 nucleotides SM_b20925: SM_b20925 - hypothetical protein, at 1,149,182 to 1,150,300 _b20925 SM_b20926: SM_b20926 - hypothetical protein, at 1,150,422 to 1,150,922 _b20926 SM_b20927: SM_b20927 - hypothetical protein, at 1,150,931 to 1,151,413 _b20927 SM_b20928: SM_b20928 - carboxyl-terminal protease, at 1,151,588 to 1,152,838 _b20928 Position (kb) 1150 1151Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1149.561 kb on + strand, within SM_b20925at 1149.561 kb on + strand, within SM_b20925at 1149.561 kb on + strand, within SM_b20925at 1149.634 kb on + strand, within SM_b20925at 1149.635 kb on - strand, within SM_b20925at 1149.635 kb on - strand, within SM_b20925at 1149.635 kb on - strand, within SM_b20925at 1149.637 kb on + strand, within SM_b20925at 1149.638 kb on - strand, within SM_b20925at 1149.779 kb on + strand, within SM_b20925at 1149.779 kb on + strand, within SM_b20925at 1149.779 kb on + strand, within SM_b20925at 1149.779 kb on + strand, within SM_b20925at 1149.780 kb on - strand, within SM_b20925at 1149.794 kb on - strand, within SM_b20925at 1149.815 kb on + strand, within SM_b20925at 1150.523 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.555 kb on - strand, within SM_b20926at 1150.555 kb on - strand, within SM_b20926at 1150.555 kb on - strand, within SM_b20926at 1150.555 kb on - strand, within SM_b20926at 1150.886 kb on - strandat 1150.886 kb on - strandat 1150.895 kb on - strandat 1150.912 kb on + strandat 1150.912 kb on + strandat 1150.912 kb on + strandat 1150.912 kb on + strandat 1150.913 kb on - strandat 1150.932 kb on + strandat 1150.932 kb on + strandat 1151.032 kb on + strand, within SM_b20927at 1151.032 kb on + strand, within SM_b20927at 1151.033 kb on - strand, within SM_b20927at 1151.197 kb on - strand, within SM_b20927at 1151.220 kb on - strand, within SM_b20927at 1151.220 kb on - strand, within SM_b20927at 1151.339 kb on + strand, within SM_b20927at 1151.340 kb on - strand, within SM_b20927at 1151.340 kb on - strand, within SM_b20927at 1151.403 kb on + strandat 1151.403 kb on + strandat 1151.424 kb on + strandat 1151.424 kb on + strandat 1151.424 kb on + strandat 1151.425 kb on - strandat 1151.425 kb on - strandat 1151.425 kb on - strandat 1151.425 kb on - strandat 1151.425 kb on - strandat 1151.425 kb on - strandat 1151.425 kb on - strandat 1151.450 kb on - strandat 1151.487 kb on - strandat 1151.491 kb on + strandat 1151.491 kb on + strandat 1151.491 kb on + strandat 1151.491 kb on + strandat 1151.491 kb on + strandat 1151.492 kb on - strandat 1151.492 kb on - strandat 1151.550 kb on - strandat 1151.550 kb on - strandat 1151.559 kb on + strandat 1151.559 kb on + strandat 1151.897 kb on + strand, within SM_b20928at 1151.897 kb on + strand, within SM_b20928at 1151.900 kb on + strand, within SM_b20928at 1151.900 kb on + strand, within SM_b20928at 1151.901 kb on - strand, within SM_b20928at 1151.901 kb on - strand, within SM_b20928

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,149,561 + SM_b20925 0.34 +1.3
1,149,561 + SM_b20925 0.34 -0.1
1,149,561 + SM_b20925 0.34 +0.9
1,149,634 + SM_b20925 0.40 +0.5
1,149,635 - SM_b20925 0.40 -0.8
1,149,635 - SM_b20925 0.40 +0.6
1,149,635 - SM_b20925 0.40 -0.4
1,149,637 + SM_b20925 0.41 -0.7
1,149,638 - SM_b20925 0.41 -1.0
1,149,779 + SM_b20925 0.53 +0.9
1,149,779 + SM_b20925 0.53 -2.4
1,149,779 + SM_b20925 0.53 -0.1
1,149,779 + SM_b20925 0.53 -0.8
1,149,780 - SM_b20925 0.53 -0.5
1,149,794 - SM_b20925 0.55 -0.3
1,149,815 + SM_b20925 0.57 +0.4
1,150,523 + SM_b20926 0.20 -2.3
1,150,554 + SM_b20926 0.26 -1.1
1,150,554 + SM_b20926 0.26 -0.4
1,150,554 + SM_b20926 0.26 -0.7
1,150,554 + SM_b20926 0.26 -0.6
1,150,554 + SM_b20926 0.26 +0.2
1,150,554 + SM_b20926 0.26 -0.7
1,150,554 + SM_b20926 0.26 -0.2
1,150,555 - SM_b20926 0.27 -0.1
1,150,555 - SM_b20926 0.27 -0.1
1,150,555 - SM_b20926 0.27 +2.9
1,150,555 - SM_b20926 0.27 -0.7
1,150,886 - -0.8
1,150,886 - +0.3
1,150,895 - +0.4
1,150,912 + -0.4
1,150,912 + +0.4
1,150,912 + +1.9
1,150,912 + -0.3
1,150,913 - -0.8
1,150,932 + -2.5
1,150,932 + -0.3
1,151,032 + SM_b20927 0.21 +1.7
1,151,032 + SM_b20927 0.21 +0.4
1,151,033 - SM_b20927 0.21 -0.1
1,151,197 - SM_b20927 0.55 -1.1
1,151,220 - SM_b20927 0.60 -0.3
1,151,220 - SM_b20927 0.60 -1.3
1,151,339 + SM_b20927 0.84 +0.2
1,151,340 - SM_b20927 0.85 +0.2
1,151,340 - SM_b20927 0.85 -0.2
1,151,403 + -0.9
1,151,403 + +0.3
1,151,424 + +1.5
1,151,424 + -0.0
1,151,424 + +0.5
1,151,425 - +0.1
1,151,425 - +0.9
1,151,425 - -1.3
1,151,425 - +0.7
1,151,425 - -0.8
1,151,425 - +0.4
1,151,425 - +0.3
1,151,450 - -0.4
1,151,487 - -1.1
1,151,491 + +1.2
1,151,491 + +0.7
1,151,491 + +0.6
1,151,491 + +0.0
1,151,491 + +0.1
1,151,492 - +2.5
1,151,492 - +0.9
1,151,550 - +0.9
1,151,550 - +0.1
1,151,559 + -0.4
1,151,559 + +0.4
1,151,897 + SM_b20928 0.25 -1.2
1,151,897 + SM_b20928 0.25 +0.8
1,151,900 + SM_b20928 0.25 -0.1
1,151,900 + SM_b20928 0.25 +0.5
1,151,901 - SM_b20928 0.25 +0.0
1,151,901 - SM_b20928 0.25 -0.1

Or see this region's nucleotide sequence