Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21681 and SM_b20909 are separated by 111 nucleotides SM_b20909 and SM_b20910 are separated by 58 nucleotides SM_b20910 and SM_b20911 are separated by 224 nucleotides SM_b20911 and SM_b20912 are separated by 23 nucleotides
SM_b21681: SM_b21681 - hypothetical protein, at 1,318,407 to 1,318,583
_b21681
SM_b20909: SM_b20909 - hypothetical protein, at 1,318,695 to 1,318,988
_b20909
SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355
_b20910
SM_b20911: SM_b20911 - hypothetical protein, at 1,319,580 to 1,319,786
_b20911
SM_b20912: SM_b20912 - ATP-dependent DNA ligase, at 1,319,810 to 1,320,904
_b20912
Position (kb)
1319
1320 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1318.581 kb on + strand at 1318.718 kb on + strand at 1318.826 kb on + strand, within SM_b20909 at 1318.827 kb on - strand, within SM_b20909 at 1318.963 kb on + strand at 1318.963 kb on + strand at 1318.964 kb on - strand at 1319.022 kb on + strand at 1319.027 kb on + strand at 1319.048 kb on + strand at 1319.130 kb on + strand, within SM_b20910 at 1319.131 kb on - strand, within SM_b20910 at 1319.131 kb on - strand, within SM_b20910 at 1319.178 kb on + strand, within SM_b20910 at 1319.178 kb on + strand, within SM_b20910 at 1319.179 kb on - strand, within SM_b20910 at 1319.254 kb on + strand, within SM_b20910 at 1319.269 kb on + strand, within SM_b20910 at 1319.270 kb on - strand, within SM_b20910 at 1319.270 kb on - strand, within SM_b20910 at 1319.416 kb on + strand at 1319.419 kb on - strand at 1319.419 kb on - strand at 1319.419 kb on - strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.428 kb on + strand at 1319.428 kb on + strand at 1319.429 kb on - strand at 1319.429 kb on - strand at 1319.432 kb on + strand at 1319.432 kb on + strand at 1319.432 kb on + strand at 1319.433 kb on - strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.600 kb on - strand at 1319.664 kb on + strand, within SM_b20911 at 1319.664 kb on + strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.666 kb on + strand, within SM_b20911 at 1319.666 kb on + strand, within SM_b20911 at 1319.667 kb on - strand, within SM_b20911 at 1319.667 kb on - strand, within SM_b20911 at 1319.695 kb on + strand, within SM_b20911 at 1319.696 kb on - strand, within SM_b20911 at 1319.696 kb on - strand, within SM_b20911 at 1319.762 kb on + strand, within SM_b20911 at 1319.763 kb on - strand, within SM_b20911 at 1319.931 kb on - strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912 at 1320.083 kb on + strand, within SM_b20912 at 1320.083 kb on + strand, within SM_b20912 at 1320.084 kb on - strand, within SM_b20912 at 1320.084 kb on - strand, within SM_b20912 at 1320.142 kb on + strand, within SM_b20912 at 1320.142 kb on + strand, within SM_b20912 at 1320.143 kb on - strand, within SM_b20912 at 1320.143 kb on - strand, within SM_b20912 at 1320.174 kb on + strand, within SM_b20912 at 1320.174 kb on + strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.266 kb on - strand, within SM_b20912 at 1320.318 kb on + strand, within SM_b20912 at 1320.319 kb on - strand, within SM_b20912 at 1320.507 kb on + strand, within SM_b20912 at 1320.525 kb on + strand, within SM_b20912 at 1320.525 kb on + strand, within SM_b20912 at 1320.722 kb on + strand, within SM_b20912 at 1320.722 kb on + strand, within SM_b20912
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,318,581 + -0.2 1,318,718 + -0.1 1,318,826 + SM_b20909 0.45 -0.7 1,318,827 - SM_b20909 0.45 +0.3 1,318,963 + +0.3 1,318,963 + -1.3 1,318,964 - +0.1 1,319,022 + -0.5 1,319,027 + -1.3 1,319,048 + -1.6 1,319,130 + SM_b20910 0.27 -0.2 1,319,131 - SM_b20910 0.27 -0.3 1,319,131 - SM_b20910 0.27 -1.6 1,319,178 + SM_b20910 0.42 -0.1 1,319,178 + SM_b20910 0.42 +1.1 1,319,179 - SM_b20910 0.43 -0.2 1,319,254 + SM_b20910 0.67 -0.4 1,319,269 + SM_b20910 0.72 -0.3 1,319,270 - SM_b20910 0.72 +0.4 1,319,270 - SM_b20910 0.72 +0.0 1,319,416 + +1.7 1,319,419 - -1.1 1,319,419 - +0.2 1,319,419 - +0.2 1,319,422 + -0.1 1,319,422 + -1.3 1,319,422 + +0.1 1,319,422 + -0.3 1,319,422 + -0.4 1,319,423 - +0.8 1,319,423 - -0.6 1,319,423 - +0.1 1,319,423 - +0.1 1,319,423 - -2.2 1,319,428 + -2.5 1,319,428 + -0.1 1,319,429 - +0.5 1,319,429 - +0.9 1,319,432 + +0.2 1,319,432 + -1.8 1,319,432 + +0.4 1,319,433 - +0.4 1,319,599 + -0.0 1,319,599 + -0.6 1,319,599 + -2.3 1,319,599 + +0.2 1,319,600 - +0.4 1,319,664 + SM_b20911 0.41 +0.3 1,319,664 + SM_b20911 0.41 -0.2 1,319,665 - SM_b20911 0.41 +2.9 1,319,665 - SM_b20911 0.41 -0.4 1,319,665 - SM_b20911 0.41 -2.2 1,319,665 - SM_b20911 0.41 +0.5 1,319,666 + SM_b20911 0.42 -0.3 1,319,666 + SM_b20911 0.42 +0.4 1,319,667 - SM_b20911 0.42 +0.8 1,319,667 - SM_b20911 0.42 +0.8 1,319,695 + SM_b20911 0.56 +2.0 1,319,696 - SM_b20911 0.56 -0.5 1,319,696 - SM_b20911 0.56 -0.2 1,319,762 + SM_b20911 0.88 -1.9 1,319,763 - SM_b20911 0.88 +0.2 1,319,931 - SM_b20912 0.11 +0.9 1,319,945 + SM_b20912 0.12 +1.1 1,319,945 + SM_b20912 0.12 -0.9 1,320,083 + SM_b20912 0.25 +1.0 1,320,083 + SM_b20912 0.25 +0.5 1,320,084 - SM_b20912 0.25 +0.1 1,320,084 - SM_b20912 0.25 +0.2 1,320,142 + SM_b20912 0.30 +0.2 1,320,142 + SM_b20912 0.30 +0.2 1,320,143 - SM_b20912 0.30 -0.7 1,320,143 - SM_b20912 0.30 +0.5 1,320,174 + SM_b20912 0.33 -3.2 1,320,174 + SM_b20912 0.33 +0.7 1,320,175 - SM_b20912 0.33 -0.5 1,320,175 - SM_b20912 0.33 -0.5 1,320,175 - SM_b20912 0.33 -0.0 1,320,266 - SM_b20912 0.42 +0.7 1,320,318 + SM_b20912 0.46 -0.5 1,320,319 - SM_b20912 0.46 +0.0 1,320,507 + SM_b20912 0.64 -2.5 1,320,525 + SM_b20912 0.65 -2.1 1,320,525 + SM_b20912 0.65 +0.3 1,320,722 + SM_b20912 0.83 +1.0 1,320,722 + SM_b20912 0.83 -0.6
Or see this region's nucleotide sequence