Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20817 and SM_b20818 are separated by 205 nucleotides SM_b20818 and SM_b20819 are separated by 42 nucleotides SM_b20819 and SM_b20820 are separated by 109 nucleotides
SM_b20817: SM_b20817 - LacI family transcriptional regulator, at 605,893 to 606,924
_b20817
SM_b20818: SM_b20818 - hydrocarbon oxygenase, at 607,130 to 608,221
_b20818
SM_b20819: SM_b20819 - ferredoxin, at 608,264 to 608,581
_b20819
SM_b20820: SM_b20820 - ferredoxin reductase, at 608,691 to 609,920
_b20820
Position (kb) 607
608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 606.161 kb on + strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.285 kb on - strand, within SM_b20817 at 606.311 kb on + strand, within SM_b20817 at 606.428 kb on + strand, within SM_b20817 at 606.428 kb on + strand at 606.429 kb on - strand, within SM_b20817 at 606.689 kb on + strand, within SM_b20817 at 606.689 kb on + strand, within SM_b20817 at 606.690 kb on - strand, within SM_b20817 at 606.807 kb on - strand, within SM_b20817 at 607.025 kb on + strand at 607.092 kb on + strand at 607.099 kb on + strand at 607.157 kb on + strand at 607.220 kb on + strand at 607.340 kb on + strand, within SM_b20818 at 607.340 kb on + strand, within SM_b20818 at 607.382 kb on + strand, within SM_b20818 at 607.382 kb on + strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.544 kb on - strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.767 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.934 kb on + strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.935 kb on - strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.976 kb on + strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 607.977 kb on - strand, within SM_b20818 at 608.174 kb on + strand at 608.219 kb on + strand at 608.220 kb on - strand at 608.357 kb on + strand, within SM_b20819 at 608.358 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.434 kb on - strand, within SM_b20819 at 608.467 kb on + strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.484 kb on - strand, within SM_b20819 at 608.534 kb on + strand, within SM_b20819 at 608.579 kb on + strand at 608.700 kb on - strand at 608.808 kb on + strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.809 kb on - strand at 608.884 kb on - strand, within SM_b20820 at 608.900 kb on + strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.901 kb on - strand, within SM_b20820 at 608.982 kb on + strand, within SM_b20820 at 608.983 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 608.993 kb on - strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.104 kb on + strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820 at 609.105 kb on - strand, within SM_b20820
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 606,161 + SM_b20817 0.26 +1.9 606,162 - SM_b20817 0.26 -0.5 606,162 - SM_b20817 0.26 +0.9 606,162 - SM_b20817 0.26 -0.8 606,162 - SM_b20817 0.26 -1.0 606,285 - SM_b20817 0.38 -0.7 606,311 + SM_b20817 0.41 -0.6 606,428 + SM_b20817 0.52 -3.0 606,428 + +0.9 606,429 - SM_b20817 0.52 +0.1 606,689 + SM_b20817 0.77 +0.4 606,689 + SM_b20817 0.77 +0.2 606,690 - SM_b20817 0.77 -0.5 606,807 - SM_b20817 0.89 +0.1 607,025 + -1.8 607,092 + +0.9 607,099 + -0.2 607,157 + +0.8 607,220 + -2.6 607,340 + SM_b20818 0.19 +2.1 607,340 + SM_b20818 0.19 +0.3 607,382 + SM_b20818 0.23 +1.3 607,382 + SM_b20818 0.23 +0.4 607,383 - SM_b20818 0.23 +0.4 607,383 - SM_b20818 0.23 +0.1 607,383 - SM_b20818 0.23 +0.6 607,383 - SM_b20818 0.23 -0.4 607,544 - SM_b20818 0.38 +1.4 607,766 + SM_b20818 0.58 -1.2 607,766 + SM_b20818 0.58 -1.4 607,767 - SM_b20818 0.58 -0.3 607,794 - SM_b20818 0.61 -0.2 607,794 - SM_b20818 0.61 -1.2 607,934 + SM_b20818 0.74 +0.1 607,935 - SM_b20818 0.74 +0.2 607,935 - SM_b20818 0.74 +0.6 607,935 - SM_b20818 0.74 +0.0 607,976 + SM_b20818 0.77 +1.6 607,976 + SM_b20818 0.77 -0.3 607,976 + SM_b20818 0.77 +0.3 607,977 - SM_b20818 0.78 -0.4 607,977 - SM_b20818 0.78 +0.8 608,174 + +0.5 608,219 + -0.1 608,220 - -0.9 608,357 + SM_b20819 0.29 +1.5 608,358 - SM_b20819 0.30 -0.3 608,434 - SM_b20819 0.53 -1.7 608,434 - SM_b20819 0.53 +2.9 608,467 + SM_b20819 0.64 +0.3 608,484 - SM_b20819 0.69 +0.7 608,484 - SM_b20819 0.69 -0.3 608,534 + SM_b20819 0.85 +0.1 608,579 + -0.5 608,700 - -0.5 608,808 + +0.4 608,809 - -0.3 608,809 - +0.5 608,809 - -0.4 608,884 - SM_b20820 0.16 -0.4 608,900 + SM_b20820 0.17 +1.6 608,901 - SM_b20820 0.17 -1.2 608,901 - SM_b20820 0.17 +1.2 608,982 + SM_b20820 0.24 -1.8 608,983 - SM_b20820 0.24 +1.0 608,993 - SM_b20820 0.25 -1.9 608,993 - SM_b20820 0.25 -0.4 609,104 + SM_b20820 0.34 -1.2 609,104 + SM_b20820 0.34 +0.4 609,105 - SM_b20820 0.34 -0.1 609,105 - SM_b20820 0.34 +0.7 609,105 - SM_b20820 0.34 +0.5
Or see this region's nucleotide sequence