Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20710

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20709 and SM_b20710 are separated by 495 nucleotidesSM_b20710 and SM_b20711 are separated by 202 nucleotides SM_b20709: SM_b20709 - 3-methyladenine DNA glycosylase, at 1,511,135 to 1,511,692 _b20709 SM_b20710: SM_b20710 - dehydrogenase, at 1,512,188 to 1,513,075 _b20710 SM_b20711: SM_b20711 - hypothetical protein, at 1,513,278 to 1,514,090 _b20711 Position (kb) 1512 1513 1514Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1511.241 kb on + strand, within SM_b20709at 1511.342 kb on + strand, within SM_b20709at 1511.342 kb on + strand, within SM_b20709at 1511.342 kb on + strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.343 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.349 kb on - strand, within SM_b20709at 1511.439 kb on + strand, within SM_b20709at 1511.481 kb on + strand, within SM_b20709at 1511.481 kb on + strand, within SM_b20709at 1511.482 kb on - strand, within SM_b20709at 1511.482 kb on - strand, within SM_b20709at 1511.896 kb on + strandat 1512.162 kb on + strandat 1512.163 kb on - strandat 1512.163 kb on - strandat 1512.163 kb on - strandat 1512.185 kb on + strandat 1512.186 kb on - strandat 1512.186 kb on - strandat 1512.204 kb on + strandat 1512.204 kb on + strandat 1512.205 kb on - strandat 1512.205 kb on - strandat 1512.205 kb on - strandat 1512.535 kb on + strand, within SM_b20710at 1512.536 kb on - strand, within SM_b20710at 1512.536 kb on - strand, within SM_b20710at 1512.536 kb on - strand, within SM_b20710at 1512.723 kb on + strand, within SM_b20710at 1512.724 kb on - strand, within SM_b20710at 1512.840 kb on - strand, within SM_b20710at 1512.840 kb on - strand, within SM_b20710at 1512.923 kb on + strand, within SM_b20710at 1512.923 kb on + strand, within SM_b20710at 1512.923 kb on + strand, within SM_b20710at 1512.923 kb on + strand, within SM_b20710at 1512.936 kb on - strand, within SM_b20710at 1513.025 kb on + strandat 1513.026 kb on - strandat 1513.033 kb on + strandat 1513.034 kb on - strandat 1513.034 kb on - strandat 1513.307 kb on + strandat 1513.307 kb on + strandat 1513.308 kb on - strandat 1513.308 kb on - strandat 1513.635 kb on - strand, within SM_b20711at 1513.983 kb on + strand, within SM_b20711at 1514.070 kb on + strandat 1514.070 kb on + strandat 1514.070 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,511,241 + SM_b20709 0.19 -0.7
1,511,342 + SM_b20709 0.37 +1.0
1,511,342 + SM_b20709 0.37 -0.5
1,511,342 + SM_b20709 0.37 +0.1
1,511,343 - SM_b20709 0.37 -0.9
1,511,343 - SM_b20709 0.37 -3.5
1,511,343 - SM_b20709 0.37 -0.1
1,511,343 - SM_b20709 0.37 +1.0
1,511,343 - SM_b20709 0.37 -0.4
1,511,349 - SM_b20709 0.38 +0.2
1,511,349 - SM_b20709 0.38 -1.6
1,511,349 - SM_b20709 0.38 -0.3
1,511,349 - SM_b20709 0.38 -0.5
1,511,439 + SM_b20709 0.54 +0.0
1,511,481 + SM_b20709 0.62 -1.4
1,511,481 + SM_b20709 0.62 -1.3
1,511,482 - SM_b20709 0.62 +0.6
1,511,482 - SM_b20709 0.62 +0.1
1,511,896 + +2.0
1,512,162 + -0.1
1,512,163 - +0.1
1,512,163 - +0.5
1,512,163 - +1.4
1,512,185 + -0.1
1,512,186 - +0.2
1,512,186 - +0.6
1,512,204 + -0.3
1,512,204 + +0.3
1,512,205 - -1.0
1,512,205 - -0.1
1,512,205 - -1.0
1,512,535 + SM_b20710 0.39 -0.2
1,512,536 - SM_b20710 0.39 -0.3
1,512,536 - SM_b20710 0.39 -0.8
1,512,536 - SM_b20710 0.39 -0.2
1,512,723 + SM_b20710 0.60 -1.7
1,512,724 - SM_b20710 0.60 +0.0
1,512,840 - SM_b20710 0.73 -0.8
1,512,840 - SM_b20710 0.73 +0.1
1,512,923 + SM_b20710 0.83 +0.7
1,512,923 + SM_b20710 0.83 -0.2
1,512,923 + SM_b20710 0.83 -1.5
1,512,923 + SM_b20710 0.83 -0.4
1,512,936 - SM_b20710 0.84 -0.5
1,513,025 + -0.6
1,513,026 - -0.4
1,513,033 + +1.5
1,513,034 - +1.3
1,513,034 - -0.8
1,513,307 + -0.8
1,513,307 + -0.6
1,513,308 - -0.5
1,513,308 - +0.2
1,513,635 - SM_b20711 0.44 -2.2
1,513,983 + SM_b20711 0.87 -0.3
1,514,070 + +0.3
1,514,070 + -0.1
1,514,070 + +0.1

Or see this region's nucleotide sequence