Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20627 and SM_b20628 overlap by 4 nucleotides SM_b20628 and SM_b20629 are separated by 85 nucleotides SM_b20629 and SM_b20630 are separated by 74 nucleotides SM_b20630 and SM_b20631 are separated by 12 nucleotides
SM_b20627: SM_b20627 - hypothetical protein, at 1,647,906 to 1,648,214
_b20627
SM_b20628: SM_b20628 - hypothetical protein, at 1,648,211 to 1,648,480
_b20628
SM_b20629: SM_b20629 - hypothetical protein, at 1,648,566 to 1,648,844
_b20629
SM_b20630: SM_b20630 - sugar uptake ABC transporter ATP-binding protein, at 1,648,919 to 1,650,004
_b20630
SM_b20631: SM_b20631 - hypothetical protein, at 1,650,017 to 1,651,939
_b20631
Position (kb)
1648
1649
1650
1651 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1648.001 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.013 kb on - strand, within SM_b20627 at 1648.013 kb on - strand, within SM_b20627 at 1648.040 kb on - strand, within SM_b20627 at 1648.315 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.360 kb on - strand, within SM_b20628 at 1648.368 kb on - strand, within SM_b20628 at 1648.437 kb on - strand at 1648.437 kb on - strand, within SM_b20628 at 1648.437 kb on - strand, within SM_b20628 at 1648.462 kb on + strand at 1648.462 kb on + strand at 1648.463 kb on - strand at 1648.481 kb on - strand at 1648.481 kb on - strand at 1648.505 kb on + strand at 1648.505 kb on + strand at 1648.505 kb on + strand at 1648.600 kb on + strand, within SM_b20629 at 1648.622 kb on + strand, within SM_b20629 at 1648.623 kb on - strand, within SM_b20629 at 1648.623 kb on - strand, within SM_b20629 at 1648.746 kb on + strand, within SM_b20629 at 1648.746 kb on + strand, within SM_b20629 at 1648.763 kb on + strand, within SM_b20629 at 1648.808 kb on + strand, within SM_b20629 at 1649.058 kb on + strand, within SM_b20630 at 1649.058 kb on + strand, within SM_b20630 at 1649.059 kb on - strand, within SM_b20630 at 1649.059 kb on - strand, within SM_b20630 at 1649.083 kb on - strand, within SM_b20630 at 1649.154 kb on - strand, within SM_b20630 at 1649.323 kb on - strand, within SM_b20630 at 1649.421 kb on + strand, within SM_b20630 at 1649.421 kb on + strand, within SM_b20630 at 1649.719 kb on + strand, within SM_b20630 at 1649.719 kb on + strand, within SM_b20630 at 1649.736 kb on + strand, within SM_b20630 at 1649.737 kb on - strand, within SM_b20630 at 1649.950 kb on - strand at 1649.960 kb on + strand at 1649.961 kb on - strand at 1650.019 kb on - strand at 1650.019 kb on - strand at 1650.019 kb on - strand at 1650.078 kb on + strand at 1650.078 kb on + strand at 1650.130 kb on - strand at 1650.292 kb on - strand, within SM_b20631 at 1650.292 kb on - strand, within SM_b20631 at 1650.292 kb on - strand, within SM_b20631 at 1650.355 kb on - strand, within SM_b20631 at 1650.355 kb on - strand, within SM_b20631 at 1650.467 kb on - strand, within SM_b20631 at 1650.579 kb on + strand, within SM_b20631 at 1650.580 kb on - strand, within SM_b20631 at 1650.684 kb on + strand, within SM_b20631 at 1650.684 kb on + strand, within SM_b20631 at 1650.684 kb on + strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.685 kb on - strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.688 kb on + strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.689 kb on - strand, within SM_b20631 at 1650.690 kb on + strand, within SM_b20631 at 1650.690 kb on + strand, within SM_b20631 at 1650.691 kb on - strand, within SM_b20631 at 1650.691 kb on - strand, within SM_b20631 at 1650.691 kb on - strand, within SM_b20631 at 1650.721 kb on + strand, within SM_b20631 at 1650.843 kb on + strand, within SM_b20631 at 1650.844 kb on - strand, within SM_b20631 at 1650.945 kb on + strand, within SM_b20631 at 1650.946 kb on - strand, within SM_b20631 at 1650.969 kb on + strand, within SM_b20631 at 1650.969 kb on + strand, within SM_b20631 at 1650.970 kb on - strand, within SM_b20631 at 1650.972 kb on + strand, within SM_b20631
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,648,001 - SM_b20627 0.31 -0.4 1,648,009 - SM_b20627 0.33 +0.7 1,648,009 - SM_b20627 0.33 -0.4 1,648,009 - SM_b20627 0.33 -0.6 1,648,013 - SM_b20627 0.35 +0.5 1,648,013 - SM_b20627 0.35 -0.1 1,648,040 - SM_b20627 0.43 -0.3 1,648,315 + SM_b20628 0.39 -0.0 1,648,359 + SM_b20628 0.55 -1.3 1,648,359 + SM_b20628 0.55 -0.6 1,648,359 + SM_b20628 0.55 +1.0 1,648,360 - SM_b20628 0.55 -1.3 1,648,368 - SM_b20628 0.58 -1.0 1,648,437 - +3.6 1,648,437 - SM_b20628 0.84 -2.2 1,648,437 - SM_b20628 0.84 +0.8 1,648,462 + +0.7 1,648,462 + -0.2 1,648,463 - -0.3 1,648,481 - +0.0 1,648,481 - +1.0 1,648,505 + +0.4 1,648,505 + +0.8 1,648,505 + +0.9 1,648,600 + SM_b20629 0.12 +0.3 1,648,622 + SM_b20629 0.20 -0.2 1,648,623 - SM_b20629 0.20 -0.2 1,648,623 - SM_b20629 0.20 -0.6 1,648,746 + SM_b20629 0.65 -0.8 1,648,746 + SM_b20629 0.65 +1.3 1,648,763 + SM_b20629 0.71 -0.4 1,648,808 + SM_b20629 0.87 +0.5 1,649,058 + SM_b20630 0.13 -0.3 1,649,058 + SM_b20630 0.13 -1.7 1,649,059 - SM_b20630 0.13 -0.4 1,649,059 - SM_b20630 0.13 -0.2 1,649,083 - SM_b20630 0.15 +0.4 1,649,154 - SM_b20630 0.22 +0.1 1,649,323 - SM_b20630 0.37 -0.6 1,649,421 + SM_b20630 0.46 -0.0 1,649,421 + SM_b20630 0.46 +0.1 1,649,719 + SM_b20630 0.74 -0.5 1,649,719 + SM_b20630 0.74 +0.2 1,649,736 + SM_b20630 0.75 -1.5 1,649,737 - SM_b20630 0.75 -0.8 1,649,950 - -0.4 1,649,960 + -0.5 1,649,961 - -0.4 1,650,019 - -0.1 1,650,019 - -1.5 1,650,019 - +3.0 1,650,078 + +0.3 1,650,078 + +0.4 1,650,130 - +0.2 1,650,292 - SM_b20631 0.14 -0.2 1,650,292 - SM_b20631 0.14 +0.7 1,650,292 - SM_b20631 0.14 +1.0 1,650,355 - SM_b20631 0.18 -0.2 1,650,355 - SM_b20631 0.18 +0.6 1,650,467 - SM_b20631 0.23 -0.0 1,650,579 + SM_b20631 0.29 -0.2 1,650,580 - SM_b20631 0.29 -0.6 1,650,684 + SM_b20631 0.35 +0.3 1,650,684 + SM_b20631 0.35 +1.7 1,650,684 + SM_b20631 0.35 -2.3 1,650,685 - SM_b20631 0.35 +0.6 1,650,685 - SM_b20631 0.35 -0.5 1,650,685 - SM_b20631 0.35 +1.3 1,650,685 - SM_b20631 0.35 -0.3 1,650,685 - SM_b20631 0.35 +0.4 1,650,685 - SM_b20631 0.35 -0.1 1,650,685 - SM_b20631 0.35 +0.3 1,650,685 - SM_b20631 0.35 -0.2 1,650,688 + SM_b20631 0.35 -1.0 1,650,688 + SM_b20631 0.35 -2.5 1,650,688 + SM_b20631 0.35 -1.3 1,650,688 + SM_b20631 0.35 -2.2 1,650,688 + SM_b20631 0.35 -0.1 1,650,689 - SM_b20631 0.35 +0.4 1,650,689 - SM_b20631 0.35 +0.5 1,650,689 - SM_b20631 0.35 -2.0 1,650,689 - SM_b20631 0.35 -3.5 1,650,689 - SM_b20631 0.35 -0.2 1,650,689 - SM_b20631 0.35 -0.1 1,650,689 - SM_b20631 0.35 -0.7 1,650,690 + SM_b20631 0.35 +0.1 1,650,690 + SM_b20631 0.35 -0.3 1,650,691 - SM_b20631 0.35 +1.4 1,650,691 - SM_b20631 0.35 -0.0 1,650,691 - SM_b20631 0.35 +0.3 1,650,721 + SM_b20631 0.37 +0.1 1,650,843 + SM_b20631 0.43 +0.0 1,650,844 - SM_b20631 0.43 -1.3 1,650,945 + SM_b20631 0.48 -0.3 1,650,946 - SM_b20631 0.48 +0.0 1,650,969 + SM_b20631 0.50 -0.5 1,650,969 + SM_b20631 0.50 -0.3 1,650,970 - SM_b20631 0.50 +1.8 1,650,972 + SM_b20631 0.50 -0.6
Or see this region's nucleotide sequence