Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20626 and SM_b20627 are separated by 34 nucleotides SM_b20627 and SM_b20628 overlap by 4 nucleotides SM_b20628 and SM_b20629 are separated by 85 nucleotides SM_b20629 and SM_b20630 are separated by 74 nucleotides
SM_b20626: SM_b20626 - AraC family transcriptional regulator, at 1,646,885 to 1,647,871
_b20626
SM_b20627: SM_b20627 - hypothetical protein, at 1,647,906 to 1,648,214
_b20627
SM_b20628: SM_b20628 - hypothetical protein, at 1,648,211 to 1,648,480
_b20628
SM_b20629: SM_b20629 - hypothetical protein, at 1,648,566 to 1,648,844
_b20629
SM_b20630: SM_b20630 - sugar uptake ABC transporter ATP-binding protein, at 1,648,919 to 1,650,004
_b20630
Position (kb) 1648
1649 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1647.215 kb on + strand, within SM_b20626 at 1647.321 kb on + strand, within SM_b20626 at 1647.368 kb on - strand, within SM_b20626 at 1647.368 kb on - strand, within SM_b20626 at 1647.368 kb on - strand, within SM_b20626 at 1647.891 kb on + strand at 1647.891 kb on + strand at 1648.001 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.009 kb on - strand, within SM_b20627 at 1648.013 kb on - strand, within SM_b20627 at 1648.013 kb on - strand, within SM_b20627 at 1648.040 kb on - strand, within SM_b20627 at 1648.315 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.359 kb on + strand, within SM_b20628 at 1648.360 kb on - strand, within SM_b20628 at 1648.368 kb on - strand, within SM_b20628 at 1648.437 kb on - strand at 1648.437 kb on - strand, within SM_b20628 at 1648.437 kb on - strand, within SM_b20628 at 1648.462 kb on + strand at 1648.462 kb on + strand at 1648.463 kb on - strand at 1648.481 kb on - strand at 1648.481 kb on - strand at 1648.505 kb on + strand at 1648.505 kb on + strand at 1648.505 kb on + strand at 1648.600 kb on + strand, within SM_b20629 at 1648.622 kb on + strand, within SM_b20629 at 1648.623 kb on - strand, within SM_b20629 at 1648.623 kb on - strand, within SM_b20629 at 1648.746 kb on + strand, within SM_b20629 at 1648.746 kb on + strand, within SM_b20629 at 1648.763 kb on + strand, within SM_b20629 at 1648.808 kb on + strand, within SM_b20629 at 1649.058 kb on + strand, within SM_b20630 at 1649.058 kb on + strand, within SM_b20630 at 1649.059 kb on - strand, within SM_b20630 at 1649.059 kb on - strand, within SM_b20630 at 1649.083 kb on - strand, within SM_b20630 at 1649.154 kb on - strand, within SM_b20630 at 1649.323 kb on - strand, within SM_b20630 at 1649.421 kb on + strand, within SM_b20630 at 1649.421 kb on + strand, within SM_b20630
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,647,215 + SM_b20626 0.33 -1.0 1,647,321 + SM_b20626 0.44 +0.1 1,647,368 - SM_b20626 0.49 +0.7 1,647,368 - SM_b20626 0.49 -1.3 1,647,368 - SM_b20626 0.49 +1.3 1,647,891 + +0.9 1,647,891 + -3.3 1,648,001 - SM_b20627 0.31 -0.4 1,648,009 - SM_b20627 0.33 +0.7 1,648,009 - SM_b20627 0.33 -0.4 1,648,009 - SM_b20627 0.33 -0.6 1,648,013 - SM_b20627 0.35 +0.5 1,648,013 - SM_b20627 0.35 -0.1 1,648,040 - SM_b20627 0.43 -0.3 1,648,315 + SM_b20628 0.39 -0.0 1,648,359 + SM_b20628 0.55 -1.3 1,648,359 + SM_b20628 0.55 -0.6 1,648,359 + SM_b20628 0.55 +1.0 1,648,360 - SM_b20628 0.55 -1.3 1,648,368 - SM_b20628 0.58 -1.0 1,648,437 - +3.6 1,648,437 - SM_b20628 0.84 -2.2 1,648,437 - SM_b20628 0.84 +0.8 1,648,462 + +0.7 1,648,462 + -0.2 1,648,463 - -0.3 1,648,481 - +0.0 1,648,481 - +1.0 1,648,505 + +0.4 1,648,505 + +0.8 1,648,505 + +0.9 1,648,600 + SM_b20629 0.12 +0.3 1,648,622 + SM_b20629 0.20 -0.2 1,648,623 - SM_b20629 0.20 -0.2 1,648,623 - SM_b20629 0.20 -0.6 1,648,746 + SM_b20629 0.65 -0.8 1,648,746 + SM_b20629 0.65 +1.3 1,648,763 + SM_b20629 0.71 -0.4 1,648,808 + SM_b20629 0.87 +0.5 1,649,058 + SM_b20630 0.13 -0.3 1,649,058 + SM_b20630 0.13 -1.7 1,649,059 - SM_b20630 0.13 -0.4 1,649,059 - SM_b20630 0.13 -0.2 1,649,083 - SM_b20630 0.15 +0.4 1,649,154 - SM_b20630 0.22 +0.1 1,649,323 - SM_b20630 0.37 -0.6 1,649,421 + SM_b20630 0.46 -0.0 1,649,421 + SM_b20630 0.46 +0.1
Or see this region's nucleotide sequence