Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20580

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20578 and SM_b20579 overlap by 4 nucleotidesSM_b20579 and SM_b20580 are separated by 94 nucleotidesSM_b20580 and SM_b20581 are separated by 73 nucleotides SM_b20578: SM_b20578 - gamma carboxymuconolactone decarboxylase, at 1,592,001 to 1,592,408 _b20578 SM_b20579: SM_b20579 - beta-ketoadipate enol-lactone hydrolase, at 1,592,405 to 1,593,211 _b20579 SM_b20580: SM_b20580 - LysR family transcriptional regulator, at 1,593,306 to 1,594,247 _b20580 SM_b20581: SM_b20581 - 4-hydroxyphenylpyruvate dioxygenase, at 1,594,321 to 1,596,210 _b20581 Position (kb) 1593 1594 1595Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1592.343 kb on + strand, within SM_b20578at 1592.344 kb on - strand, within SM_b20578at 1592.487 kb on - strand, within SM_b20579at 1592.488 kb on + strand, within SM_b20579at 1592.488 kb on + strand, within SM_b20579at 1592.488 kb on + strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.489 kb on - strand, within SM_b20579at 1592.529 kb on - strand, within SM_b20579at 1593.006 kb on + strand, within SM_b20579at 1593.174 kb on + strandat 1593.267 kb on - strandat 1593.299 kb on - strandat 1593.323 kb on + strandat 1593.892 kb on - strand, within SM_b20580at 1594.139 kb on + strand, within SM_b20580at 1594.140 kb on - strand, within SM_b20580at 1594.140 kb on - strand, within SM_b20580at 1594.245 kb on + strandat 1594.246 kb on - strandat 1594.246 kb on - strandat 1594.322 kb on + strandat 1594.348 kb on - strandat 1594.451 kb on + strandat 1594.451 kb on + strandat 1594.451 kb on + strandat 1594.452 kb on - strandat 1594.463 kb on + strandat 1594.464 kb on - strandat 1594.464 kb on - strandat 1594.464 kb on - strandat 1594.475 kb on + strandat 1594.499 kb on + strandat 1594.499 kb on + strandat 1594.574 kb on + strand, within SM_b20581at 1594.574 kb on + strand, within SM_b20581at 1594.575 kb on - strand, within SM_b20581at 1594.617 kb on + strand, within SM_b20581at 1594.617 kb on + strand, within SM_b20581at 1594.617 kb on + strand, within SM_b20581at 1594.618 kb on - strand, within SM_b20581at 1594.638 kb on + strand, within SM_b20581at 1594.836 kb on + strand, within SM_b20581at 1594.844 kb on + strand, within SM_b20581at 1594.844 kb on + strand, within SM_b20581at 1594.989 kb on - strand, within SM_b20581at 1594.989 kb on - strand, within SM_b20581at 1595.110 kb on + strand, within SM_b20581at 1595.129 kb on + strand, within SM_b20581at 1595.130 kb on - strand, within SM_b20581at 1595.200 kb on + strand, within SM_b20581at 1595.200 kb on + strand, within SM_b20581at 1595.201 kb on - strand, within SM_b20581at 1595.201 kb on - strand, within SM_b20581

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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1,592,343 + SM_b20578 0.84 +1.1
1,592,344 - SM_b20578 0.84 +0.4
1,592,487 - SM_b20579 0.10 +0.1
1,592,488 + SM_b20579 0.10 -1.0
1,592,488 + SM_b20579 0.10 +0.1
1,592,488 + SM_b20579 0.10 -0.0
1,592,489 - SM_b20579 0.10 +0.2
1,592,489 - SM_b20579 0.10 +0.0
1,592,489 - SM_b20579 0.10 -1.6
1,592,489 - SM_b20579 0.10 +0.7
1,592,489 - SM_b20579 0.10 -0.3
1,592,489 - SM_b20579 0.10 -2.6
1,592,489 - SM_b20579 0.10 +0.1
1,592,489 - SM_b20579 0.10 -1.0
1,592,529 - SM_b20579 0.15 -0.1
1,593,006 + SM_b20579 0.74 -0.4
1,593,174 + -2.6
1,593,267 - +1.3
1,593,299 - -1.4
1,593,323 + +0.2
1,593,892 - SM_b20580 0.62 -0.6
1,594,139 + SM_b20580 0.88 -1.6
1,594,140 - SM_b20580 0.89 -0.6
1,594,140 - SM_b20580 0.89 -1.8
1,594,245 + -1.4
1,594,246 - +0.1
1,594,246 - -0.4
1,594,322 + -0.2
1,594,348 - +1.0
1,594,451 + -0.5
1,594,451 + +0.5
1,594,451 + +1.0
1,594,452 - +0.6
1,594,463 + +0.3
1,594,464 - +2.6
1,594,464 - -0.6
1,594,464 - +0.7
1,594,475 + +1.0
1,594,499 + -1.3
1,594,499 + -0.4
1,594,574 + SM_b20581 0.13 +2.4
1,594,574 + SM_b20581 0.13 -0.7
1,594,575 - SM_b20581 0.13 +0.9
1,594,617 + SM_b20581 0.16 -0.5
1,594,617 + SM_b20581 0.16 -3.2
1,594,617 + SM_b20581 0.16 -0.1
1,594,618 - SM_b20581 0.16 +0.1
1,594,638 + SM_b20581 0.17 +0.1
1,594,836 + SM_b20581 0.27 +0.5
1,594,844 + SM_b20581 0.28 -0.3
1,594,844 + SM_b20581 0.28 -1.0
1,594,989 - SM_b20581 0.35 -0.7
1,594,989 - SM_b20581 0.35 -1.2
1,595,110 + SM_b20581 0.42 -2.5
1,595,129 + SM_b20581 0.43 -0.1
1,595,130 - SM_b20581 0.43 +0.7
1,595,200 + SM_b20581 0.47 +0.1
1,595,200 + SM_b20581 0.47 +0.4
1,595,201 - SM_b20581 0.47 +1.6
1,595,201 - SM_b20581 0.47 +0.7

Or see this region's nucleotide sequence