Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20578 and SM_b20579 overlap by 4 nucleotides SM_b20579 and SM_b20580 are separated by 94 nucleotides SM_b20580 and SM_b20581 are separated by 73 nucleotides
SM_b20578: SM_b20578 - gamma carboxymuconolactone decarboxylase, at 1,592,001 to 1,592,408
_b20578
SM_b20579: SM_b20579 - beta-ketoadipate enol-lactone hydrolase, at 1,592,405 to 1,593,211
_b20579
SM_b20580: SM_b20580 - LysR family transcriptional regulator, at 1,593,306 to 1,594,247
_b20580
SM_b20581: SM_b20581 - 4-hydroxyphenylpyruvate dioxygenase, at 1,594,321 to 1,596,210
_b20581
Position (kb)
1593
1594
1595 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1592.343 kb on + strand, within SM_b20578 at 1592.344 kb on - strand, within SM_b20578 at 1592.487 kb on - strand, within SM_b20579 at 1592.488 kb on + strand, within SM_b20579 at 1592.488 kb on + strand, within SM_b20579 at 1592.488 kb on + strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.529 kb on - strand, within SM_b20579 at 1593.006 kb on + strand, within SM_b20579 at 1593.174 kb on + strand at 1593.267 kb on - strand at 1593.299 kb on - strand at 1593.323 kb on + strand at 1593.892 kb on - strand, within SM_b20580 at 1594.139 kb on + strand, within SM_b20580 at 1594.140 kb on - strand, within SM_b20580 at 1594.140 kb on - strand, within SM_b20580 at 1594.245 kb on + strand at 1594.246 kb on - strand at 1594.246 kb on - strand at 1594.322 kb on + strand at 1594.348 kb on - strand at 1594.451 kb on + strand at 1594.451 kb on + strand at 1594.451 kb on + strand at 1594.452 kb on - strand at 1594.463 kb on + strand at 1594.464 kb on - strand at 1594.464 kb on - strand at 1594.464 kb on - strand at 1594.475 kb on + strand at 1594.499 kb on + strand at 1594.499 kb on + strand at 1594.574 kb on + strand, within SM_b20581 at 1594.574 kb on + strand, within SM_b20581 at 1594.575 kb on - strand, within SM_b20581 at 1594.617 kb on + strand, within SM_b20581 at 1594.617 kb on + strand, within SM_b20581 at 1594.617 kb on + strand, within SM_b20581 at 1594.618 kb on - strand, within SM_b20581 at 1594.638 kb on + strand, within SM_b20581 at 1594.836 kb on + strand, within SM_b20581 at 1594.844 kb on + strand, within SM_b20581 at 1594.844 kb on + strand, within SM_b20581 at 1594.989 kb on - strand, within SM_b20581 at 1594.989 kb on - strand, within SM_b20581 at 1595.110 kb on + strand, within SM_b20581 at 1595.129 kb on + strand, within SM_b20581 at 1595.130 kb on - strand, within SM_b20581 at 1595.200 kb on + strand, within SM_b20581 at 1595.200 kb on + strand, within SM_b20581 at 1595.201 kb on - strand, within SM_b20581 at 1595.201 kb on - strand, within SM_b20581
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 1,592,343 + SM_b20578 0.84 +1.1 1,592,344 - SM_b20578 0.84 +0.4 1,592,487 - SM_b20579 0.10 +0.1 1,592,488 + SM_b20579 0.10 -1.0 1,592,488 + SM_b20579 0.10 +0.1 1,592,488 + SM_b20579 0.10 -0.0 1,592,489 - SM_b20579 0.10 +0.2 1,592,489 - SM_b20579 0.10 +0.0 1,592,489 - SM_b20579 0.10 -1.6 1,592,489 - SM_b20579 0.10 +0.7 1,592,489 - SM_b20579 0.10 -0.3 1,592,489 - SM_b20579 0.10 -2.6 1,592,489 - SM_b20579 0.10 +0.1 1,592,489 - SM_b20579 0.10 -1.0 1,592,529 - SM_b20579 0.15 -0.1 1,593,006 + SM_b20579 0.74 -0.4 1,593,174 + -2.6 1,593,267 - +1.3 1,593,299 - -1.4 1,593,323 + +0.2 1,593,892 - SM_b20580 0.62 -0.6 1,594,139 + SM_b20580 0.88 -1.6 1,594,140 - SM_b20580 0.89 -0.6 1,594,140 - SM_b20580 0.89 -1.8 1,594,245 + -1.4 1,594,246 - +0.1 1,594,246 - -0.4 1,594,322 + -0.2 1,594,348 - +1.0 1,594,451 + -0.5 1,594,451 + +0.5 1,594,451 + +1.0 1,594,452 - +0.6 1,594,463 + +0.3 1,594,464 - +2.6 1,594,464 - -0.6 1,594,464 - +0.7 1,594,475 + +1.0 1,594,499 + -1.3 1,594,499 + -0.4 1,594,574 + SM_b20581 0.13 +2.4 1,594,574 + SM_b20581 0.13 -0.7 1,594,575 - SM_b20581 0.13 +0.9 1,594,617 + SM_b20581 0.16 -0.5 1,594,617 + SM_b20581 0.16 -3.2 1,594,617 + SM_b20581 0.16 -0.1 1,594,618 - SM_b20581 0.16 +0.1 1,594,638 + SM_b20581 0.17 +0.1 1,594,836 + SM_b20581 0.27 +0.5 1,594,844 + SM_b20581 0.28 -0.3 1,594,844 + SM_b20581 0.28 -1.0 1,594,989 - SM_b20581 0.35 -0.7 1,594,989 - SM_b20581 0.35 -1.2 1,595,110 + SM_b20581 0.42 -2.5 1,595,129 + SM_b20581 0.43 -0.1 1,595,130 - SM_b20581 0.43 +0.7 1,595,200 + SM_b20581 0.47 +0.1 1,595,200 + SM_b20581 0.47 +0.4 1,595,201 - SM_b20581 0.47 +1.6 1,595,201 - SM_b20581 0.47 +0.7
Or see this region's nucleotide sequence