Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20551

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20549 and SM_b20550 are separated by 167 nucleotidesSM_b20550 and SM_b20551 are separated by 173 nucleotidesSM_b20551 and SM_b20552 are separated by 751 nucleotides SM_b20549: SM_b20549 - hypothetical protein, at 576,048 to 576,365 _b20549 SM_b20550: SM_b20550 - hypothetical protein, at 576,533 to 576,778 _b20550 SM_b20551: SM_b20551 - hypothetical protein, at 576,952 to 577,398 _b20551 SM_b20552: SM_b20552 - hypothetical protein, at 578,150 to 578,881 _b20552 Position (kb) 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1at 575.999 kb on + strandat 576.078 kb on + strandat 576.078 kb on + strandat 576.079 kb on - strandat 576.079 kb on - strandat 576.079 kb on - strandat 576.151 kb on - strand, within SM_b20549at 576.151 kb on - strand, within SM_b20549at 576.151 kb on - strand, within SM_b20549at 576.151 kb on - strand, within SM_b20549at 576.406 kb on + strandat 576.407 kb on - strandat 576.407 kb on - strandat 576.407 kb on - strandat 576.546 kb on + strandat 576.572 kb on + strand, within SM_b20550at 576.602 kb on - strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.606 kb on - strand, within SM_b20550at 576.648 kb on + strand, within SM_b20550at 576.722 kb on + strandat 576.722 kb on + strand, within SM_b20550at 576.722 kb on + strand, within SM_b20550at 576.722 kb on + strand, within SM_b20550at 576.772 kb on + strandat 576.779 kb on + strandat 577.081 kb on - strand, within SM_b20551at 577.100 kb on + strand, within SM_b20551at 577.100 kb on + strandat 577.100 kb on + strand, within SM_b20551at 577.100 kb on + strand, within SM_b20551at 577.100 kb on + strand, within SM_b20551at 577.101 kb on - strand, within SM_b20551at 577.101 kb on - strand, within SM_b20551at 577.101 kb on - strand, within SM_b20551at 577.101 kb on - strand, within SM_b20551at 577.129 kb on + strand, within SM_b20551at 577.129 kb on + strand, within SM_b20551at 577.129 kb on + strand, within SM_b20551at 577.130 kb on - strand, within SM_b20551at 577.130 kb on - strand, within SM_b20551at 577.178 kb on + strand, within SM_b20551at 577.179 kb on - strand, within SM_b20551at 577.179 kb on - strand, within SM_b20551at 577.189 kb on - strand, within SM_b20551at 577.270 kb on + strand, within SM_b20551at 577.409 kb on + strandat 577.409 kb on + strandat 577.410 kb on - strandat 577.410 kb on - strandat 577.410 kb on - strandat 577.410 kb on - strandat 577.460 kb on - strandat 577.524 kb on - strandat 577.561 kb on + strandat 577.561 kb on + strandat 577.562 kb on - strandat 577.648 kb on - strandat 577.718 kb on + strandat 577.718 kb on + strandat 577.718 kb on + strandat 577.719 kb on - strandat 577.719 kb on - strandat 577.720 kb on + strandat 577.720 kb on + strandat 577.720 kb on + strandat 577.720 kb on + strandat 577.721 kb on - strandat 577.722 kb on + strandat 577.722 kb on + strandat 577.722 kb on + strandat 577.723 kb on - strandat 577.723 kb on - strandat 577.723 kb on - strandat 577.742 kb on + strandat 577.742 kb on + strandat 577.805 kb on + strandat 577.806 kb on - strandat 577.823 kb on - strandat 577.881 kb on + strandat 577.881 kb on + strandat 577.882 kb on - strandat 577.948 kb on - strandat 578.038 kb on + strandat 578.038 kb on + strandat 578.038 kb on + strandat 578.039 kb on - strandat 578.039 kb on - strandat 578.148 kb on + strandat 578.148 kb on + strandat 578.149 kb on - strandat 578.149 kb on - strandat 578.181 kb on + strandat 578.229 kb on + strand, within SM_b20552at 578.230 kb on - strand, within SM_b20552at 578.315 kb on + strand, within SM_b20552at 578.328 kb on + strand, within SM_b20552at 578.329 kb on - strand, within SM_b20552at 578.335 kb on - strand, within SM_b20552

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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575,999 + -0.4
576,078 + -0.1
576,078 + -0.3
576,079 - +1.2
576,079 - -1.4
576,079 - -0.3
576,151 - SM_b20549 0.32 +0.5
576,151 - SM_b20549 0.32 +0.8
576,151 - SM_b20549 0.32 +1.5
576,151 - SM_b20549 0.32 +0.9
576,406 + -0.2
576,407 - +0.5
576,407 - +0.0
576,407 - -1.7
576,546 + -2.4
576,572 + SM_b20550 0.16 -0.6
576,602 - SM_b20550 0.28 -0.1
576,605 + SM_b20550 0.29 +0.6
576,605 + SM_b20550 0.29 -0.1
576,605 + SM_b20550 0.29 -2.1
576,605 + SM_b20550 0.29 -0.3
576,605 + SM_b20550 0.29 -0.1
576,605 + SM_b20550 0.29 -0.3
576,605 + SM_b20550 0.29 -0.5
576,606 - SM_b20550 0.30 -1.0
576,648 + SM_b20550 0.47 +0.6
576,722 + +0.1
576,722 + SM_b20550 0.77 -0.5
576,722 + SM_b20550 0.77 +0.3
576,722 + SM_b20550 0.77 +0.1
576,772 + -0.4
576,779 + -0.2
577,081 - SM_b20551 0.29 -0.5
577,100 + SM_b20551 0.33 -1.4
577,100 + -1.4
577,100 + SM_b20551 0.33 +0.0
577,100 + SM_b20551 0.33 -1.3
577,100 + SM_b20551 0.33 -0.8
577,101 - SM_b20551 0.33 +1.3
577,101 - SM_b20551 0.33 -0.7
577,101 - SM_b20551 0.33 -0.5
577,101 - SM_b20551 0.33 -0.3
577,129 + SM_b20551 0.40 +0.0
577,129 + SM_b20551 0.40 +0.3
577,129 + SM_b20551 0.40 +0.7
577,130 - SM_b20551 0.40 -1.2
577,130 - SM_b20551 0.40 -0.1
577,178 + SM_b20551 0.51 +0.6
577,179 - SM_b20551 0.51 -0.0
577,179 - SM_b20551 0.51 +0.1
577,189 - SM_b20551 0.53 -0.6
577,270 + SM_b20551 0.71 -1.4
577,409 + -0.2
577,409 + -3.3
577,410 - +1.6
577,410 - -1.4
577,410 - -0.3
577,410 - -3.6
577,460 - -0.2
577,524 - +0.1
577,561 + +1.6
577,561 + +0.5
577,562 - -0.4
577,648 - +0.3
577,718 + -0.3
577,718 + +0.9
577,718 + +0.2
577,719 - +0.1
577,719 - +0.7
577,720 + -0.2
577,720 + +0.6
577,720 + -0.2
577,720 + -0.0
577,721 - +0.1
577,722 + -0.3
577,722 + -0.5
577,722 + -0.3
577,723 - -1.2
577,723 - +0.2
577,723 - -0.8
577,742 + +0.9
577,742 + -1.4
577,805 + +1.3
577,806 - +0.6
577,823 - -0.7
577,881 + -1.4
577,881 + -2.9
577,882 - -0.4
577,948 - -1.0
578,038 + -1.0
578,038 + +0.9
578,038 + +0.0
578,039 - -0.1
578,039 - -1.1
578,148 + -0.2
578,148 + -0.2
578,149 - +0.1
578,149 - +0.0
578,181 + -0.1
578,229 + SM_b20552 0.11 +1.1
578,230 - SM_b20552 0.11 +0.8
578,315 + SM_b20552 0.23 -0.3
578,328 + SM_b20552 0.24 +0.5
578,329 - SM_b20552 0.24 +0.3
578,335 - SM_b20552 0.25 +1.5

Or see this region's nucleotide sequence