Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20496

Experiment: Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20495 and SM_b20496 are separated by 432 nucleotidesSM_b20496 and SM_b20497 are separated by 8 nucleotides SM_b20495: SM_b20495 - hypothetical protein, at 513,218 to 514,921 _b20495 SM_b20496: SM_b20496 - GMC oxidoreductase, at 515,354 to 516,964 _b20496 SM_b20497: SM_b20497 - L-xylulose kinase, at 516,973 to 518,502 _b20497 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 514.418 kb on + strand, within SM_b20495at 514.418 kb on - strand, within SM_b20495at 514.420 kb on + strand, within SM_b20495at 514.421 kb on - strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.664 kb on + strand, within SM_b20495at 514.665 kb on - strand, within SM_b20495at 514.665 kb on - strand, within SM_b20495at 514.665 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.667 kb on - strand, within SM_b20495at 514.688 kb on + strand, within SM_b20495at 514.689 kb on - strand, within SM_b20495at 514.741 kb on + strand, within SM_b20495at 514.810 kb on - strandat 514.820 kb on + strandat 514.885 kb on - strandat 514.885 kb on - strandat 515.144 kb on + strandat 515.145 kb on - strandat 515.356 kb on - strandat 515.718 kb on + strand, within SM_b20496at 515.719 kb on - strand, within SM_b20496at 515.719 kb on - strand, within SM_b20496at 515.719 kb on - strand, within SM_b20496at 515.823 kb on + strand, within SM_b20496at 515.875 kb on - strand, within SM_b20496at 515.875 kb on - strand, within SM_b20496at 515.875 kb on - strand, within SM_b20496at 515.875 kb on - strand, within SM_b20496at 515.918 kb on + strand, within SM_b20496at 515.919 kb on - strand, within SM_b20496at 515.970 kb on + strand, within SM_b20496at 516.010 kb on - strand, within SM_b20496at 516.010 kb on - strand, within SM_b20496at 516.010 kb on - strand, within SM_b20496at 516.010 kb on - strand, within SM_b20496at 516.010 kb on - strand, within SM_b20496at 516.156 kb on - strand, within SM_b20496at 516.386 kb on + strand, within SM_b20496at 516.636 kb on + strandat 516.659 kb on - strand, within SM_b20496at 516.659 kb on - strand, within SM_b20496at 516.659 kb on - strand, within SM_b20496at 516.659 kb on - strand, within SM_b20496at 516.660 kb on + strand, within SM_b20496at 516.660 kb on + strand, within SM_b20496at 516.660 kb on + strand, within SM_b20496at 516.661 kb on - strand, within SM_b20496at 516.661 kb on - strand, within SM_b20496at 516.661 kb on - strand, within SM_b20496at 516.661 kb on - strand, within SM_b20496at 516.790 kb on - strand, within SM_b20496at 517.055 kb on + strandat 517.056 kb on - strandat 517.056 kb on - strandat 517.065 kb on - strandat 517.069 kb on - strandat 517.069 kb on - strandat 517.076 kb on + strandat 517.076 kb on + strandat 517.077 kb on - strandat 517.077 kb on - strandat 517.267 kb on + strand, within SM_b20497at 517.421 kb on + strand, within SM_b20497at 517.421 kb on + strand, within SM_b20497at 517.422 kb on - strand, within SM_b20497at 517.422 kb on - strand, within SM_b20497at 517.422 kb on - strand, within SM_b20497at 517.466 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.475 kb on + strand, within SM_b20497at 517.476 kb on - strand, within SM_b20497at 517.476 kb on - strand, within SM_b20497at 517.628 kb on + strand, within SM_b20497

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
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514,418 + SM_b20495 0.70 +0.1
514,418 - SM_b20495 0.70 +1.0
514,420 + SM_b20495 0.71 +0.1
514,421 - SM_b20495 0.71 -0.3
514,664 + SM_b20495 0.85 -0.7
514,664 + SM_b20495 0.85 +0.1
514,664 + SM_b20495 0.85 +0.6
514,664 + SM_b20495 0.85 -1.5
514,664 + SM_b20495 0.85 -3.0
514,664 + SM_b20495 0.85 +1.0
514,664 + SM_b20495 0.85 -0.9
514,665 - SM_b20495 0.85 +0.4
514,665 - SM_b20495 0.85 +0.3
514,665 - SM_b20495 0.85 +0.0
514,667 - SM_b20495 0.85 -0.0
514,667 - SM_b20495 0.85 +0.4
514,667 - SM_b20495 0.85 -0.0
514,667 - SM_b20495 0.85 -0.7
514,667 - SM_b20495 0.85 +1.0
514,688 + SM_b20495 0.86 -0.2
514,689 - SM_b20495 0.86 -0.2
514,741 + SM_b20495 0.89 +0.2
514,810 - +2.3
514,820 + -1.4
514,885 - +0.7
514,885 - -2.7
515,144 + -1.4
515,145 - +1.0
515,356 - -0.2
515,718 + SM_b20496 0.23 -1.2
515,719 - SM_b20496 0.23 -0.0
515,719 - SM_b20496 0.23 +0.1
515,719 - SM_b20496 0.23 -0.1
515,823 + SM_b20496 0.29 +0.4
515,875 - SM_b20496 0.32 -0.0
515,875 - SM_b20496 0.32 -0.5
515,875 - SM_b20496 0.32 +0.8
515,875 - SM_b20496 0.32 -0.8
515,918 + SM_b20496 0.35 +1.0
515,919 - SM_b20496 0.35 +0.6
515,970 + SM_b20496 0.38 +0.5
516,010 - SM_b20496 0.41 +0.6
516,010 - SM_b20496 0.41 -0.1
516,010 - SM_b20496 0.41 +0.2
516,010 - SM_b20496 0.41 +0.5
516,010 - SM_b20496 0.41 +0.6
516,156 - SM_b20496 0.50 -1.1
516,386 + SM_b20496 0.64 +3.5
516,636 + +2.5
516,659 - SM_b20496 0.81 -0.3
516,659 - SM_b20496 0.81 -0.2
516,659 - SM_b20496 0.81 +0.3
516,659 - SM_b20496 0.81 -3.0
516,660 + SM_b20496 0.81 -0.2
516,660 + SM_b20496 0.81 +1.9
516,660 + SM_b20496 0.81 -0.9
516,661 - SM_b20496 0.81 -0.3
516,661 - SM_b20496 0.81 +0.6
516,661 - SM_b20496 0.81 +0.7
516,661 - SM_b20496 0.81 +2.0
516,790 - SM_b20496 0.89 +2.3
517,055 + -0.1
517,056 - +0.2
517,056 - -1.6
517,065 - -0.8
517,069 - -0.0
517,069 - +0.5
517,076 + -0.4
517,076 + +0.1
517,077 - +0.2
517,077 - -1.3
517,267 + SM_b20497 0.19 -1.4
517,421 + SM_b20497 0.29 +0.8
517,421 + SM_b20497 0.29 -0.4
517,422 - SM_b20497 0.29 +1.0
517,422 - SM_b20497 0.29 +0.5
517,422 - SM_b20497 0.29 +0.1
517,466 + SM_b20497 0.32 +0.4
517,475 + SM_b20497 0.33 +0.9
517,475 + SM_b20497 0.33 +0.4
517,475 + SM_b20497 0.33 -0.1
517,475 + SM_b20497 0.33 +0.2
517,475 + SM_b20497 0.33 -0.4
517,475 + SM_b20497 0.33 -0.0
517,476 - SM_b20497 0.33 -2.0
517,476 - SM_b20497 0.33 +0.2
517,628 + SM_b20497 0.43 -0.3

Or see this region's nucleotide sequence