Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20474 and SM_b20475 overlap by 14 nucleotides SM_b20475 and SM_b20476 are separated by 339 nucleotides SM_b20476 and SM_b20477 are separated by 77 nucleotides
SM_b20474: SM_b20474 - hypothetical protein, at 487,781 to 488,002
_b20474
SM_b20475: SM_b20475 - hypothetical protein, at 487,989 to 488,483
_b20475
SM_b20476: SM_b20476 - peptide ABC transporter substrate-binding protein, at 488,823 to 490,388
_b20476
SM_b20477: SM_b20477 - peptide ABC transporter permease, at 490,466 to 491,413
_b20477
Position (kb) 488
489
490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 487.870 kb on + strand, within SM_b20474 at 487.944 kb on + strand, within SM_b20474 at 488.040 kb on + strand, within SM_b20475 at 488.040 kb on + strand, within SM_b20475 at 488.041 kb on - strand, within SM_b20475 at 488.119 kb on - strand, within SM_b20475 at 488.156 kb on + strand, within SM_b20475 at 488.216 kb on - strand, within SM_b20475 at 488.423 kb on - strand, within SM_b20475 at 488.423 kb on - strand, within SM_b20475 at 488.455 kb on + strand at 488.460 kb on + strand at 488.461 kb on - strand at 488.477 kb on + strand at 488.477 kb on + strand at 488.478 kb on - strand at 488.535 kb on + strand at 488.535 kb on + strand at 488.535 kb on + strand at 489.006 kb on + strand, within SM_b20476 at 489.006 kb on + strand, within SM_b20476 at 489.006 kb on + strand, within SM_b20476 at 489.006 kb on + strand, within SM_b20476 at 489.007 kb on - strand, within SM_b20476 at 489.007 kb on - strand, within SM_b20476 at 489.007 kb on - strand, within SM_b20476 at 489.096 kb on + strand, within SM_b20476 at 489.097 kb on - strand, within SM_b20476 at 489.098 kb on + strand, within SM_b20476 at 489.110 kb on - strand, within SM_b20476 at 489.276 kb on - strand, within SM_b20476 at 489.276 kb on - strand, within SM_b20476 at 489.276 kb on - strand, within SM_b20476 at 489.720 kb on + strand, within SM_b20476 at 489.832 kb on - strand, within SM_b20476 at 489.903 kb on + strand, within SM_b20476 at 489.903 kb on + strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 489.904 kb on - strand, within SM_b20476 at 490.006 kb on - strand, within SM_b20476 at 490.164 kb on + strand, within SM_b20476 at 490.164 kb on + strand, within SM_b20476 at 490.387 kb on - strand at 490.462 kb on - strand at 490.475 kb on + strand at 490.476 kb on - strand at 490.476 kb on - strand at 490.589 kb on + strand, within SM_b20477 at 490.590 kb on - strand, within SM_b20477 at 490.922 kb on + strand, within SM_b20477 at 490.922 kb on + strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.923 kb on - strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.967 kb on + strand, within SM_b20477 at 490.968 kb on - strand, within SM_b20477 at 490.968 kb on - strand, within SM_b20477 at 491.058 kb on + strand, within SM_b20477 at 491.059 kb on - strand, within SM_b20477 at 491.059 kb on - strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.105 kb on + strand, within SM_b20477 at 491.106 kb on - strand, within SM_b20477 at 491.106 kb on - strand, within SM_b20477 at 491.154 kb on - strand, within SM_b20477 at 491.317 kb on - strand, within SM_b20477 at 491.348 kb on + strand at 491.348 kb on + strand at 491.348 kb on + strand at 491.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 487,870 + SM_b20474 0.40 -1.8 487,944 + SM_b20474 0.73 -0.0 488,040 + SM_b20475 0.10 +0.0 488,040 + SM_b20475 0.10 +1.6 488,041 - SM_b20475 0.11 +0.1 488,119 - SM_b20475 0.26 -0.4 488,156 + SM_b20475 0.34 +0.3 488,216 - SM_b20475 0.46 +0.0 488,423 - SM_b20475 0.88 +1.7 488,423 - SM_b20475 0.88 -0.8 488,455 + +0.3 488,460 + +0.4 488,461 - +0.7 488,477 + +0.7 488,477 + -0.5 488,478 - -0.3 488,535 + -3.5 488,535 + +1.3 488,535 + +0.2 489,006 + SM_b20476 0.12 -0.2 489,006 + SM_b20476 0.12 +0.5 489,006 + SM_b20476 0.12 +1.0 489,006 + SM_b20476 0.12 -2.3 489,007 - SM_b20476 0.12 -1.8 489,007 - SM_b20476 0.12 -0.4 489,007 - SM_b20476 0.12 -0.5 489,096 + SM_b20476 0.17 +1.2 489,097 - SM_b20476 0.17 -0.6 489,098 + SM_b20476 0.18 -0.1 489,110 - SM_b20476 0.18 -0.0 489,276 - SM_b20476 0.29 -0.4 489,276 - SM_b20476 0.29 -0.8 489,276 - SM_b20476 0.29 -0.3 489,720 + SM_b20476 0.57 -1.5 489,832 - SM_b20476 0.64 -1.7 489,903 + SM_b20476 0.69 +0.1 489,903 + SM_b20476 0.69 -0.8 489,904 - SM_b20476 0.69 -0.2 489,904 - SM_b20476 0.69 +0.2 489,904 - SM_b20476 0.69 +0.6 489,904 - SM_b20476 0.69 -1.5 490,006 - SM_b20476 0.76 -0.0 490,164 + SM_b20476 0.86 -0.5 490,164 + SM_b20476 0.86 -0.4 490,387 - -1.4 490,462 - -0.1 490,475 + +0.2 490,476 - -0.1 490,476 - +0.8 490,589 + SM_b20477 0.13 -2.0 490,590 - SM_b20477 0.13 +0.2 490,922 + SM_b20477 0.48 +0.4 490,922 + SM_b20477 0.48 -2.7 490,923 - SM_b20477 0.48 -1.3 490,923 - SM_b20477 0.48 -0.5 490,923 - SM_b20477 0.48 -0.5 490,967 + SM_b20477 0.53 -0.4 490,967 + SM_b20477 0.53 -1.8 490,967 + SM_b20477 0.53 +0.3 490,968 - SM_b20477 0.53 +0.4 490,968 - SM_b20477 0.53 -0.6 491,058 + SM_b20477 0.62 -0.3 491,059 - SM_b20477 0.63 +0.7 491,059 - SM_b20477 0.63 -0.4 491,105 + SM_b20477 0.67 +1.0 491,105 + SM_b20477 0.67 -0.6 491,105 + SM_b20477 0.67 -0.8 491,105 + SM_b20477 0.67 -2.4 491,105 + SM_b20477 0.67 +0.9 491,105 + SM_b20477 0.67 +0.1 491,105 + SM_b20477 0.67 -1.5 491,106 - SM_b20477 0.68 -1.2 491,106 - SM_b20477 0.68 -0.2 491,154 - SM_b20477 0.73 -0.8 491,317 - SM_b20477 0.90 -1.4 491,348 + +0.3 491,348 + -1.1 491,348 + +0.8 491,349 - +1.8
Or see this region's nucleotide sequence