Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20390 and SM_b20391 overlap by 19 nucleotides SM_b20391 and SM_b20392 are separated by 35 nucleotides SM_b20392 and SM_b20393 are separated by 144 nucleotides
SM_b20390: SM_b20390 - hypothetical protein, at 402,436 to 403,668
_b20390
SM_b20391: SM_b20391 - cellulose synthase catalytic subunit protein, at 403,650 to 405,644
_b20391
SM_b20392: SM_b20392 - transcriptional regulator NanR, at 405,680 to 406,387
_b20392
SM_b20393: SM_b20393 - ribulose bisphosphate carboxylaseoxygenase, large subunit protein, at 406,532 to 407,788
_b20393
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 403.053 kb on - strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.087 kb on + strand, within SM_b20390 at 403.212 kb on - strand, within SM_b20390 at 403.367 kb on - strand, within SM_b20390 at 403.379 kb on - strand, within SM_b20390 at 403.666 kb on + strand at 403.788 kb on + strand at 403.788 kb on + strand at 403.788 kb on + strand at 403.789 kb on - strand at 403.926 kb on + strand, within SM_b20391 at 403.926 kb on + strand, within SM_b20391 at 403.926 kb on + strand, within SM_b20391 at 404.022 kb on + strand, within SM_b20391 at 404.023 kb on - strand, within SM_b20391 at 404.023 kb on - strand, within SM_b20391 at 404.025 kb on - strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.103 kb on + strand, within SM_b20391 at 404.104 kb on - strand, within SM_b20391 at 404.104 kb on - strand, within SM_b20391 at 404.269 kb on + strand, within SM_b20391 at 404.274 kb on + strand, within SM_b20391 at 404.274 kb on + strand, within SM_b20391 at 404.275 kb on - strand, within SM_b20391 at 404.395 kb on + strand at 404.396 kb on - strand, within SM_b20391 at 404.396 kb on - strand, within SM_b20391 at 404.691 kb on + strand, within SM_b20391 at 404.692 kb on - strand, within SM_b20391 at 404.776 kb on - strand, within SM_b20391 at 404.776 kb on - strand, within SM_b20391 at 404.807 kb on + strand, within SM_b20391 at 404.808 kb on - strand, within SM_b20391 at 404.896 kb on - strand, within SM_b20391 at 404.896 kb on - strand, within SM_b20391 at 404.932 kb on - strand, within SM_b20391 at 404.960 kb on + strand, within SM_b20391 at 405.078 kb on + strand, within SM_b20391 at 405.079 kb on - strand, within SM_b20391 at 405.080 kb on + strand, within SM_b20391 at 405.081 kb on - strand, within SM_b20391 at 405.483 kb on + strand at 405.483 kb on + strand at 405.483 kb on + strand at 405.484 kb on - strand at 405.484 kb on - strand at 405.487 kb on - strand at 405.501 kb on + strand at 405.501 kb on + strand at 405.502 kb on - strand at 405.547 kb on - strand at 405.681 kb on + strand at 405.681 kb on + strand at 405.682 kb on - strand at 405.682 kb on - strand at 405.682 kb on - strand at 405.699 kb on + strand at 405.700 kb on - strand at 405.803 kb on + strand, within SM_b20392 at 405.804 kb on - strand, within SM_b20392 at 405.886 kb on - strand, within SM_b20392 at 405.887 kb on + strand, within SM_b20392 at 406.076 kb on + strand, within SM_b20392 at 406.076 kb on + strand, within SM_b20392 at 406.077 kb on - strand, within SM_b20392 at 406.207 kb on + strand, within SM_b20392 at 406.208 kb on - strand, within SM_b20392 at 406.208 kb on - strand, within SM_b20392 at 406.517 kb on + strand at 406.517 kb on + strand at 406.518 kb on - strand at 406.536 kb on + strand at 406.536 kb on + strand at 406.547 kb on + strand at 406.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 403,053 - SM_b20390 0.50 -1.1 403,087 + SM_b20390 0.53 -0.1 403,087 + SM_b20390 0.53 +1.8 403,087 + SM_b20390 0.53 +1.3 403,212 - SM_b20390 0.63 -0.5 403,367 - SM_b20390 0.76 -0.4 403,379 - SM_b20390 0.76 -0.3 403,666 + -0.8 403,788 + -0.4 403,788 + -0.2 403,788 + -1.0 403,789 - +2.0 403,926 + SM_b20391 0.14 -1.9 403,926 + SM_b20391 0.14 -1.6 403,926 + SM_b20391 0.14 -0.3 404,022 + SM_b20391 0.19 -0.8 404,023 - SM_b20391 0.19 +0.7 404,023 - SM_b20391 0.19 -0.9 404,025 - SM_b20391 0.19 -0.1 404,103 + SM_b20391 0.23 -0.0 404,103 + SM_b20391 0.23 -0.2 404,103 + SM_b20391 0.23 -0.3 404,104 - SM_b20391 0.23 -1.8 404,104 - SM_b20391 0.23 -0.2 404,269 + SM_b20391 0.31 +2.3 404,274 + SM_b20391 0.31 -0.5 404,274 + SM_b20391 0.31 +0.1 404,275 - SM_b20391 0.31 -1.2 404,395 + +0.0 404,396 - SM_b20391 0.37 -0.3 404,396 - SM_b20391 0.37 +0.7 404,691 + SM_b20391 0.52 -0.8 404,692 - SM_b20391 0.52 +0.1 404,776 - SM_b20391 0.56 -0.6 404,776 - SM_b20391 0.56 +0.7 404,807 + SM_b20391 0.58 -0.2 404,808 - SM_b20391 0.58 +0.1 404,896 - SM_b20391 0.62 -1.6 404,896 - SM_b20391 0.62 +0.1 404,932 - SM_b20391 0.64 +0.5 404,960 + SM_b20391 0.66 +0.1 405,078 + SM_b20391 0.72 -0.7 405,079 - SM_b20391 0.72 -1.3 405,080 + SM_b20391 0.72 -0.9 405,081 - SM_b20391 0.72 -0.4 405,483 + -0.8 405,483 + +0.5 405,483 + -1.2 405,484 - +3.2 405,484 - +0.0 405,487 - -0.9 405,501 + +0.0 405,501 + +1.0 405,502 - -1.4 405,547 - +0.1 405,681 + -1.0 405,681 + -0.6 405,682 - -1.6 405,682 - +0.8 405,682 - +2.5 405,699 + +0.9 405,700 - -0.1 405,803 + SM_b20392 0.17 +0.4 405,804 - SM_b20392 0.18 -0.8 405,886 - SM_b20392 0.29 -0.7 405,887 + SM_b20392 0.29 -0.4 406,076 + SM_b20392 0.56 -0.0 406,076 + SM_b20392 0.56 -0.8 406,077 - SM_b20392 0.56 -0.8 406,207 + SM_b20392 0.74 -0.7 406,208 - SM_b20392 0.75 -0.1 406,208 - SM_b20392 0.75 -3.0 406,517 + -0.3 406,517 + +0.6 406,518 - -0.7 406,536 + -2.0 406,536 + +3.7 406,547 + -0.1 406,547 + -0.1
Or see this region's nucleotide sequence