Experiment: Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20283 and SM_b20284 are separated by 84 nucleotides SM_b20284 and SM_b20285 are separated by 79 nucleotides
SM_b20283: SM_b20283 - spermidine/putrescine ABC transporter permease, at 287,493 to 288,476
_b20283
SM_b20284: SM_b20284 - spermidine/putrescine ABC transporter substrate-binding protein, at 288,561 to 289,661
_b20284
SM_b20285: SM_b20285 - transcriptional regulator, at 289,741 to 290,718
_b20285
Position (kb) 288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 287.704 kb on + strand, within SM_b20283 at 287.704 kb on + strand, within SM_b20283 at 287.704 kb on + strand, within SM_b20283 at 287.705 kb on - strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.706 kb on + strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.707 kb on - strand, within SM_b20283 at 287.839 kb on + strand, within SM_b20283 at 287.840 kb on - strand, within SM_b20283 at 287.857 kb on + strand, within SM_b20283 at 287.857 kb on + strand, within SM_b20283 at 287.858 kb on - strand, within SM_b20283 at 287.858 kb on - strand, within SM_b20283 at 287.872 kb on + strand, within SM_b20283 at 287.872 kb on + strand, within SM_b20283 at 287.872 kb on + strand, within SM_b20283 at 287.873 kb on - strand, within SM_b20283 at 287.873 kb on - strand, within SM_b20283 at 287.931 kb on - strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.085 kb on + strand, within SM_b20283 at 288.086 kb on - strand, within SM_b20283 at 288.086 kb on - strand, within SM_b20283 at 288.241 kb on + strand, within SM_b20283 at 288.380 kb on - strand at 288.418 kb on + strand at 288.467 kb on + strand at 288.776 kb on + strand, within SM_b20284 at 288.791 kb on + strand, within SM_b20284 at 288.791 kb on + strand, within SM_b20284 at 288.791 kb on + strand, within SM_b20284 at 288.792 kb on - strand, within SM_b20284 at 288.793 kb on + strand, within SM_b20284 at 288.794 kb on - strand, within SM_b20284 at 288.839 kb on - strand, within SM_b20284 at 288.839 kb on - strand, within SM_b20284 at 288.851 kb on - strand, within SM_b20284 at 288.851 kb on - strand, within SM_b20284 at 288.851 kb on - strand, within SM_b20284 at 288.874 kb on - strand, within SM_b20284 at 288.874 kb on - strand, within SM_b20284 at 288.926 kb on + strand, within SM_b20284 at 288.937 kb on + strand, within SM_b20284 at 288.937 kb on + strand, within SM_b20284 at 288.938 kb on - strand, within SM_b20284 at 288.938 kb on - strand, within SM_b20284 at 288.938 kb on - strand, within SM_b20284 at 288.938 kb on - strand, within SM_b20284 at 288.986 kb on - strand, within SM_b20284 at 288.986 kb on - strand, within SM_b20284 at 288.988 kb on + strand, within SM_b20284 at 288.989 kb on - strand, within SM_b20284 at 289.022 kb on - strand, within SM_b20284 at 289.022 kb on - strand, within SM_b20284 at 289.072 kb on + strand, within SM_b20284 at 289.073 kb on - strand, within SM_b20284 at 289.138 kb on + strand, within SM_b20284 at 289.139 kb on - strand, within SM_b20284 at 289.139 kb on - strand, within SM_b20284 at 289.139 kb on - strand, within SM_b20284 at 289.156 kb on + strand, within SM_b20284 at 289.156 kb on + strand, within SM_b20284 at 289.156 kb on + strand, within SM_b20284 at 289.156 kb on + strand, within SM_b20284 at 289.199 kb on + strand, within SM_b20284 at 289.199 kb on + strand, within SM_b20284 at 289.200 kb on - strand, within SM_b20284 at 289.201 kb on + strand, within SM_b20284 at 289.252 kb on + strand, within SM_b20284 at 289.291 kb on + strand, within SM_b20284 at 289.292 kb on - strand, within SM_b20284 at 289.439 kb on - strand, within SM_b20284 at 289.487 kb on + strand, within SM_b20284 at 289.509 kb on - strand, within SM_b20284 at 289.534 kb on + strand, within SM_b20284 at 289.534 kb on + strand, within SM_b20284 at 289.534 kb on + strand, within SM_b20284 at 289.534 kb on + strand, within SM_b20284 at 289.683 kb on + strand at 289.707 kb on + strand at 289.815 kb on + strand at 289.973 kb on + strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 289.974 kb on - strand, within SM_b20285 at 290.092 kb on + strand, within SM_b20285 at 290.092 kb on + strand, within SM_b20285 at 290.422 kb on + strand, within SM_b20285
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml remove 287,704 + SM_b20283 0.21 +1.7 287,704 + SM_b20283 0.21 -0.9 287,704 + SM_b20283 0.21 +1.0 287,705 - SM_b20283 0.22 +0.9 287,706 + SM_b20283 0.22 -1.0 287,706 + SM_b20283 0.22 -1.7 287,706 + SM_b20283 0.22 +1.1 287,706 + SM_b20283 0.22 -1.2 287,707 - SM_b20283 0.22 +1.6 287,707 - SM_b20283 0.22 -1.3 287,707 - SM_b20283 0.22 +0.5 287,707 - SM_b20283 0.22 +1.6 287,707 - SM_b20283 0.22 +0.3 287,839 + SM_b20283 0.35 -1.1 287,840 - SM_b20283 0.35 -2.8 287,857 + SM_b20283 0.37 -0.1 287,857 + SM_b20283 0.37 -0.2 287,858 - SM_b20283 0.37 -3.5 287,858 - SM_b20283 0.37 +0.5 287,872 + SM_b20283 0.39 -0.7 287,872 + SM_b20283 0.39 -2.5 287,872 + SM_b20283 0.39 +1.1 287,873 - SM_b20283 0.39 -2.2 287,873 - SM_b20283 0.39 -0.9 287,931 - SM_b20283 0.45 -0.0 288,085 + SM_b20283 0.60 -0.5 288,085 + SM_b20283 0.60 -2.3 288,085 + SM_b20283 0.60 +0.1 288,085 + SM_b20283 0.60 -2.0 288,086 - SM_b20283 0.60 +2.3 288,086 - SM_b20283 0.60 -0.6 288,241 + SM_b20283 0.76 -1.0 288,380 - +2.0 288,418 + +1.5 288,467 + -1.1 288,776 + SM_b20284 0.20 -0.5 288,791 + SM_b20284 0.21 +0.4 288,791 + SM_b20284 0.21 -1.5 288,791 + SM_b20284 0.21 +1.4 288,792 - SM_b20284 0.21 -0.8 288,793 + SM_b20284 0.21 -0.1 288,794 - SM_b20284 0.21 -0.4 288,839 - SM_b20284 0.25 -1.0 288,839 - SM_b20284 0.25 +0.3 288,851 - SM_b20284 0.26 -0.6 288,851 - SM_b20284 0.26 +0.8 288,851 - SM_b20284 0.26 -0.2 288,874 - SM_b20284 0.28 -0.8 288,874 - SM_b20284 0.28 -1.1 288,926 + SM_b20284 0.33 -0.7 288,937 + SM_b20284 0.34 -2.2 288,937 + SM_b20284 0.34 -0.1 288,938 - SM_b20284 0.34 -1.1 288,938 - SM_b20284 0.34 +1.0 288,938 - SM_b20284 0.34 +0.5 288,938 - SM_b20284 0.34 -0.8 288,986 - SM_b20284 0.39 -0.3 288,986 - SM_b20284 0.39 +2.3 288,988 + SM_b20284 0.39 +1.0 288,989 - SM_b20284 0.39 -0.3 289,022 - SM_b20284 0.42 -2.9 289,022 - SM_b20284 0.42 +0.2 289,072 + SM_b20284 0.46 +4.0 289,073 - SM_b20284 0.47 +0.2 289,138 + SM_b20284 0.52 -0.6 289,139 - SM_b20284 0.52 +0.3 289,139 - SM_b20284 0.52 -0.3 289,139 - SM_b20284 0.52 -1.6 289,156 + SM_b20284 0.54 -0.2 289,156 + SM_b20284 0.54 +0.2 289,156 + SM_b20284 0.54 +0.5 289,156 + SM_b20284 0.54 -1.0 289,199 + SM_b20284 0.58 -0.5 289,199 + SM_b20284 0.58 -0.5 289,200 - SM_b20284 0.58 +0.7 289,201 + SM_b20284 0.58 +0.8 289,252 + SM_b20284 0.63 +0.3 289,291 + SM_b20284 0.66 -0.4 289,292 - SM_b20284 0.66 -2.0 289,439 - SM_b20284 0.80 -0.5 289,487 + SM_b20284 0.84 -0.5 289,509 - SM_b20284 0.86 -0.1 289,534 + SM_b20284 0.88 -1.7 289,534 + SM_b20284 0.88 -0.6 289,534 + SM_b20284 0.88 +0.8 289,534 + SM_b20284 0.88 -2.1 289,683 + -0.3 289,707 + +0.3 289,815 + +0.0 289,973 + SM_b20285 0.24 +1.1 289,974 - SM_b20285 0.24 +0.3 289,974 - SM_b20285 0.24 +0.8 289,974 - SM_b20285 0.24 +1.0 289,974 - SM_b20285 0.24 +0.3 289,974 - SM_b20285 0.24 +2.4 290,092 + SM_b20285 0.36 -0.1 290,092 + SM_b20285 0.36 -0.0 290,422 + SM_b20285 0.70 +0.1
Or see this region's nucleotide sequence