Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20271

Experiment: Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20270 and SM_b20271 are separated by 83 nucleotidesSM_b20271 and SM_b20272 are separated by 400 nucleotides SM_b20270: SM_b20270 - proline racemase, at 275,434 to 276,462 _b20270 SM_b20271: SM_b20271 - hypothetical protein, at 276,546 to 276,977 _b20271 SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586 _b20272 Position (kb) 276 277Strain fitness (log2 ratio) -1 0 1at 275.689 kb on - strand, within SM_b20270at 275.847 kb on + strand, within SM_b20270at 275.848 kb on - strand, within SM_b20270at 275.848 kb on - strand, within SM_b20270at 276.378 kb on + strandat 276.641 kb on + strand, within SM_b20271at 277.087 kb on + strandat 277.088 kb on - strandat 277.265 kb on + strandat 277.265 kb on + strandat 277.266 kb on - strandat 277.266 kb on - strandat 277.394 kb on - strandat 277.512 kb on + strand, within SM_b20272at 277.513 kb on - strand, within SM_b20272at 277.514 kb on + strand, within SM_b20272at 277.560 kb on + strand, within SM_b20272at 277.561 kb on - strand, within SM_b20272at 277.561 kb on - strand, within SM_b20272at 277.561 kb on - strand, within SM_b20272at 277.561 kb on - strand, within SM_b20272at 277.782 kb on - strand, within SM_b20272at 277.782 kb on - strand, within SM_b20272at 277.849 kb on - strand, within SM_b20272at 277.855 kb on + strand, within SM_b20272at 277.856 kb on - strand, within SM_b20272at 277.883 kb on + strand, within SM_b20272at 277.953 kb on + strand, within SM_b20272at 277.953 kb on + strand, within SM_b20272

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.001 mg/ml
remove
275,689 - SM_b20270 0.25 +0.7
275,847 + SM_b20270 0.40 -1.7
275,848 - SM_b20270 0.40 -0.3
275,848 - SM_b20270 0.40 +0.4
276,378 + -0.6
276,641 + SM_b20271 0.22 -1.0
277,087 + +1.0
277,088 - -0.7
277,265 + -0.1
277,265 + +0.2
277,266 - +0.7
277,266 - -0.3
277,394 - -1.2
277,512 + SM_b20272 0.11 -1.0
277,513 - SM_b20272 0.11 -0.8
277,514 + SM_b20272 0.11 +0.8
277,560 + SM_b20272 0.15 +0.0
277,561 - SM_b20272 0.15 -0.5
277,561 - SM_b20272 0.15 +1.0
277,561 - SM_b20272 0.15 +0.4
277,561 - SM_b20272 0.15 +1.0
277,782 - SM_b20272 0.33 +0.2
277,782 - SM_b20272 0.33 -0.6
277,849 - SM_b20272 0.39 +0.0
277,855 + SM_b20272 0.39 +1.0
277,856 - SM_b20272 0.40 -0.2
277,883 + SM_b20272 0.42 -0.4
277,953 + SM_b20272 0.48 +0.7
277,953 + SM_b20272 0.48 +0.3

Or see this region's nucleotide sequence