Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37130

Experiment: R2A 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt RR42_RS37130: RR42_RS37130 - hypothetical protein, at 3,792,645 to 3,792,842 _RS37130 Position (kb) 3792 3793Strain fitness (log2 ratio) -2 -1 0 1 2at 3791.712 kb on + strandat 3791.755 kb on - strandat 3791.806 kb on - strandat 3791.806 kb on - strandat 3791.806 kb on - strandat 3791.862 kb on + strandat 3791.863 kb on - strandat 3792.046 kb on + strandat 3792.046 kb on + strandat 3792.047 kb on - strandat 3792.100 kb on + strandat 3792.159 kb on + strandat 3792.160 kb on - strandat 3792.174 kb on - strandat 3792.205 kb on - strandat 3792.248 kb on + strandat 3792.249 kb on - strandat 3792.249 kb on - strandat 3792.249 kb on - strandat 3792.249 kb on - strandat 3792.255 kb on - strandat 3792.255 kb on - strandat 3792.393 kb on - strandat 3792.409 kb on - strandat 3792.431 kb on + strandat 3792.431 kb on + strandat 3792.432 kb on - strandat 3792.438 kb on + strandat 3792.439 kb on - strandat 3792.439 kb on - strandat 3792.439 kb on - strandat 3792.457 kb on - strandat 3792.494 kb on + strandat 3792.533 kb on + strandat 3792.534 kb on - strandat 3792.541 kb on + strandat 3792.541 kb on + strandat 3792.542 kb on - strandat 3792.542 kb on - strandat 3792.542 kb on - strandat 3792.582 kb on + strandat 3792.583 kb on - strandat 3792.651 kb on - strandat 3792.651 kb on - strandat 3792.651 kb on - strandat 3792.689 kb on + strand, within RR42_RS37130at 3792.692 kb on - strand, within RR42_RS37130at 3792.692 kb on - strand, within RR42_RS37130at 3792.726 kb on - strand, within RR42_RS37130at 3792.820 kb on + strand, within RR42_RS37130at 3792.820 kb on + strand, within RR42_RS37130at 3792.820 kb on + strand, within RR42_RS37130at 3792.820 kb on + strand, within RR42_RS37130at 3792.821 kb on - strand, within RR42_RS37130at 3792.825 kb on - strandat 3792.853 kb on + strandat 3792.853 kb on + strandat 3792.853 kb on + strandat 3792.853 kb on + strandat 3792.854 kb on - strandat 3792.854 kb on - strandat 3792.854 kb on - strandat 3792.938 kb on + strandat 3792.938 kb on + strandat 3792.939 kb on - strandat 3792.995 kb on + strandat 3792.995 kb on + strandat 3793.088 kb on - strandat 3793.088 kb on - strandat 3793.175 kb on + strandat 3793.176 kb on - strandat 3793.217 kb on + strandat 3793.217 kb on + strandat 3793.217 kb on + strandat 3793.217 kb on + strandat 3793.217 kb on + strandat 3793.217 kb on + strandat 3793.217 kb on + strandat 3793.217 kb on + strandat 3793.217 kb on + strandat 3793.218 kb on - strandat 3793.289 kb on + strandat 3793.290 kb on - strandat 3793.290 kb on - strandat 3793.300 kb on + strandat 3793.300 kb on + strandat 3793.312 kb on - strandat 3793.423 kb on + strandat 3793.423 kb on + strandat 3793.423 kb on + strandat 3793.424 kb on - strandat 3793.424 kb on - strandat 3793.462 kb on - strandat 3793.529 kb on + strandat 3793.529 kb on + strandat 3793.559 kb on + strandat 3793.559 kb on + strandat 3793.559 kb on + strandat 3793.560 kb on - strandat 3793.560 kb on - strandat 3793.563 kb on + strandat 3793.563 kb on + strandat 3793.563 kb on + strandat 3793.563 kb on + strandat 3793.563 kb on + strandat 3793.563 kb on + strandat 3793.564 kb on - strandat 3793.622 kb on + strandat 3793.623 kb on - strandat 3793.623 kb on - strandat 3793.623 kb on - strandat 3793.623 kb on - strandat 3793.636 kb on - strandat 3793.646 kb on - strandat 3793.686 kb on + strandat 3793.686 kb on + strandat 3793.686 kb on + strandat 3793.687 kb on - strandat 3793.783 kb on + strandat 3793.784 kb on - strandat 3793.784 kb on - strandat 3793.784 kb on - strandat 3793.784 kb on - strandat 3793.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 37C
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3,791,712 + -0.2
3,791,755 - +1.5
3,791,806 - +0.0
3,791,806 - -0.6
3,791,806 - +0.5
3,791,862 + -1.6
3,791,863 - +0.6
3,792,046 + +2.2
3,792,046 + +0.5
3,792,047 - -0.1
3,792,100 + +0.5
3,792,159 + +0.4
3,792,160 - +0.3
3,792,174 - +0.4
3,792,205 - +0.4
3,792,248 + -1.1
3,792,249 - +1.3
3,792,249 - +0.5
3,792,249 - -0.1
3,792,249 - +1.2
3,792,255 - +0.7
3,792,255 - +1.1
3,792,393 - +0.1
3,792,409 - -1.7
3,792,431 + +0.5
3,792,431 + +0.5
3,792,432 - +0.3
3,792,438 + +1.6
3,792,439 - -0.1
3,792,439 - +0.9
3,792,439 - +1.4
3,792,457 - -0.7
3,792,494 + -1.7
3,792,533 + -1.2
3,792,534 - +0.6
3,792,541 + +0.6
3,792,541 + +0.3
3,792,542 - -0.6
3,792,542 - +0.2
3,792,542 - +0.4
3,792,582 + +0.8
3,792,583 - -0.2
3,792,651 - +1.6
3,792,651 - +0.6
3,792,651 - +0.4
3,792,689 + RR42_RS37130 0.22 +1.0
3,792,692 - RR42_RS37130 0.24 +0.3
3,792,692 - RR42_RS37130 0.24 +0.5
3,792,726 - RR42_RS37130 0.41 -0.7
3,792,820 + RR42_RS37130 0.88 -0.6
3,792,820 + RR42_RS37130 0.88 +0.2
3,792,820 + RR42_RS37130 0.88 +0.3
3,792,820 + RR42_RS37130 0.88 +0.0
3,792,821 - RR42_RS37130 0.89 +1.4
3,792,825 - +0.7
3,792,853 + +0.1
3,792,853 + -0.4
3,792,853 + -0.6
3,792,853 + +0.3
3,792,854 - +0.2
3,792,854 - -0.0
3,792,854 - +0.9
3,792,938 + +1.1
3,792,938 + +0.1
3,792,939 - +0.9
3,792,995 + +0.2
3,792,995 + -0.2
3,793,088 - +0.0
3,793,088 - +0.5
3,793,175 + +0.5
3,793,176 - -0.8
3,793,217 + +0.0
3,793,217 + -0.3
3,793,217 + -1.5
3,793,217 + +0.4
3,793,217 + -0.1
3,793,217 + -0.1
3,793,217 + +0.7
3,793,217 + -0.3
3,793,217 + +0.3
3,793,218 - -0.1
3,793,289 + +0.8
3,793,290 - +0.0
3,793,290 - -1.0
3,793,300 + -0.1
3,793,300 + -0.3
3,793,312 - -0.3
3,793,423 + -0.3
3,793,423 + +0.1
3,793,423 + +0.5
3,793,424 - +1.2
3,793,424 - +1.1
3,793,462 - +0.3
3,793,529 + +1.1
3,793,529 + -0.0
3,793,559 + -0.3
3,793,559 + +0.9
3,793,559 + +0.3
3,793,560 - +0.4
3,793,560 - +0.1
3,793,563 + -0.4
3,793,563 + -0.9
3,793,563 + +0.8
3,793,563 + +0.8
3,793,563 + -0.3
3,793,563 + +0.3
3,793,564 - -0.6
3,793,622 + +0.3
3,793,623 - -0.8
3,793,623 - +1.3
3,793,623 - +0.6
3,793,623 - +0.1
3,793,636 - -0.1
3,793,646 - -0.5
3,793,686 + +0.1
3,793,686 + +2.2
3,793,686 + +0.2
3,793,687 - -0.1
3,793,783 + -0.1
3,793,784 - +0.3
3,793,784 - -0.2
3,793,784 - -1.8
3,793,784 - -0.2
3,793,784 - +0.4

Or see this region's nucleotide sequence