Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25805

Experiment: R2A 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25800 and RR42_RS25805 are separated by 81 nucleotidesRR42_RS25805 and RR42_RS25810 are separated by 623 nucleotidesRR42_RS25810 and RR42_RS25815 are separated by 1 nucleotides RR42_RS25800: RR42_RS25800 - porin, at 1,127,884 to 1,128,963 _RS25800 RR42_RS25805: RR42_RS25805 - hypothetical protein, at 1,129,045 to 1,130,439 _RS25805 RR42_RS25810: RR42_RS25810 - DNA-binding protein, at 1,131,063 to 1,131,314 _RS25810 RR42_RS25815: RR42_RS25815 - hypothetical protein, at 1,131,316 to 1,132,113 _RS25815 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1128.083 kb on + strand, within RR42_RS25800at 1128.090 kb on + strand, within RR42_RS25800at 1128.172 kb on + strand, within RR42_RS25800at 1128.172 kb on + strand, within RR42_RS25800at 1128.173 kb on - strand, within RR42_RS25800at 1128.188 kb on + strand, within RR42_RS25800at 1128.189 kb on - strand, within RR42_RS25800at 1128.330 kb on + strand, within RR42_RS25800at 1128.392 kb on + strand, within RR42_RS25800at 1128.392 kb on + strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.393 kb on - strand, within RR42_RS25800at 1128.409 kb on - strand, within RR42_RS25800at 1128.409 kb on - strand, within RR42_RS25800at 1128.409 kb on - strand, within RR42_RS25800at 1128.411 kb on - strand, within RR42_RS25800at 1128.411 kb on - strand, within RR42_RS25800at 1128.411 kb on - strand, within RR42_RS25800at 1128.455 kb on + strand, within RR42_RS25800at 1128.498 kb on - strand, within RR42_RS25800at 1128.501 kb on + strand, within RR42_RS25800at 1128.501 kb on + strand, within RR42_RS25800at 1128.501 kb on + strand, within RR42_RS25800at 1128.502 kb on - strand, within RR42_RS25800at 1128.502 kb on - strand, within RR42_RS25800at 1128.502 kb on - strand, within RR42_RS25800at 1128.557 kb on + strand, within RR42_RS25800at 1128.557 kb on + strand, within RR42_RS25800at 1128.557 kb on + strand, within RR42_RS25800at 1128.563 kb on + strand, within RR42_RS25800at 1128.564 kb on - strand, within RR42_RS25800at 1128.688 kb on + strand, within RR42_RS25800at 1128.689 kb on - strand, within RR42_RS25800at 1128.850 kb on - strand, within RR42_RS25800at 1128.850 kb on - strand, within RR42_RS25800at 1128.888 kb on - strandat 1128.896 kb on - strandat 1128.896 kb on - strandat 1128.948 kb on + strandat 1128.948 kb on + strandat 1128.948 kb on + strandat 1128.949 kb on - strandat 1128.949 kb on - strandat 1128.974 kb on + strandat 1128.974 kb on + strandat 1128.974 kb on + strandat 1128.974 kb on + strandat 1128.975 kb on - strandat 1128.975 kb on - strandat 1129.078 kb on + strandat 1129.079 kb on - strandat 1129.079 kb on - strandat 1129.291 kb on - strand, within RR42_RS25805at 1129.293 kb on - strand, within RR42_RS25805at 1129.293 kb on - strand, within RR42_RS25805at 1129.298 kb on + strand, within RR42_RS25805at 1129.298 kb on + strand, within RR42_RS25805at 1129.298 kb on + strand, within RR42_RS25805at 1129.299 kb on - strand, within RR42_RS25805at 1129.414 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.503 kb on + strand, within RR42_RS25805at 1129.504 kb on - strand, within RR42_RS25805at 1129.505 kb on + strand, within RR42_RS25805at 1129.505 kb on + strand, within RR42_RS25805at 1129.506 kb on - strand, within RR42_RS25805at 1129.506 kb on - strand, within RR42_RS25805at 1129.556 kb on + strand, within RR42_RS25805at 1129.591 kb on + strand, within RR42_RS25805at 1129.967 kb on + strand, within RR42_RS25805at 1129.967 kb on + strand, within RR42_RS25805at 1129.967 kb on + strand, within RR42_RS25805at 1129.967 kb on + strand, within RR42_RS25805at 1129.967 kb on + strand, within RR42_RS25805at 1130.018 kb on + strand, within RR42_RS25805at 1130.019 kb on - strand, within RR42_RS25805at 1130.215 kb on + strand, within RR42_RS25805at 1130.215 kb on + strand, within RR42_RS25805at 1130.216 kb on - strand, within RR42_RS25805at 1130.216 kb on - strand, within RR42_RS25805at 1130.216 kb on - strand, within RR42_RS25805at 1130.220 kb on - strand, within RR42_RS25805at 1130.230 kb on + strand, within RR42_RS25805at 1130.230 kb on + strand, within RR42_RS25805at 1130.231 kb on - strand, within RR42_RS25805at 1130.237 kb on + strand, within RR42_RS25805at 1130.237 kb on + strand, within RR42_RS25805at 1130.238 kb on - strand, within RR42_RS25805at 1130.298 kb on + strand, within RR42_RS25805at 1130.298 kb on + strand, within RR42_RS25805at 1130.457 kb on + strandat 1130.460 kb on + strandat 1130.460 kb on + strandat 1130.460 kb on + strandat 1130.525 kb on - strandat 1130.525 kb on - strandat 1130.532 kb on + strandat 1130.532 kb on + strandat 1130.532 kb on + strandat 1130.532 kb on + strandat 1130.532 kb on + strandat 1130.533 kb on - strandat 1130.590 kb on + strandat 1130.591 kb on - strandat 1130.591 kb on - strandat 1130.591 kb on - strandat 1130.591 kb on - strandat 1130.716 kb on + strandat 1130.716 kb on + strandat 1130.736 kb on + strandat 1130.737 kb on - strandat 1130.824 kb on + strandat 1130.824 kb on + strandat 1130.862 kb on + strandat 1130.868 kb on + strandat 1131.064 kb on + strandat 1131.065 kb on - strandat 1131.065 kb on - strandat 1131.173 kb on + strand, within RR42_RS25810at 1131.174 kb on - strand, within RR42_RS25810at 1131.175 kb on + strand, within RR42_RS25810at 1131.175 kb on + strand, within RR42_RS25810at 1131.175 kb on + strand, within RR42_RS25810at 1131.175 kb on + strand, within RR42_RS25810at 1131.176 kb on - strand, within RR42_RS25810at 1131.176 kb on - strand, within RR42_RS25810at 1131.176 kb on - strand, within RR42_RS25810at 1131.306 kb on + strandat 1131.306 kb on + strandat 1131.307 kb on - strandat 1131.377 kb on + strandat 1131.377 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 37C
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1,128,083 + RR42_RS25800 0.18 +0.3
1,128,090 + RR42_RS25800 0.19 -0.6
1,128,172 + RR42_RS25800 0.27 -0.7
1,128,172 + RR42_RS25800 0.27 -0.4
1,128,173 - RR42_RS25800 0.27 -0.9
1,128,188 + RR42_RS25800 0.28 -0.9
1,128,189 - RR42_RS25800 0.28 -0.2
1,128,330 + RR42_RS25800 0.41 +0.8
1,128,392 + RR42_RS25800 0.47 +1.4
1,128,392 + RR42_RS25800 0.47 +0.6
1,128,393 - RR42_RS25800 0.47 -0.1
1,128,393 - RR42_RS25800 0.47 +1.2
1,128,393 - RR42_RS25800 0.47 +0.9
1,128,393 - RR42_RS25800 0.47 -0.9
1,128,409 - RR42_RS25800 0.49 -1.7
1,128,409 - RR42_RS25800 0.49 -1.7
1,128,409 - RR42_RS25800 0.49 -0.4
1,128,411 - RR42_RS25800 0.49 +0.3
1,128,411 - RR42_RS25800 0.49 -0.4
1,128,411 - RR42_RS25800 0.49 +0.2
1,128,455 + RR42_RS25800 0.53 +0.7
1,128,498 - RR42_RS25800 0.57 -0.9
1,128,501 + RR42_RS25800 0.57 +0.5
1,128,501 + RR42_RS25800 0.57 -0.4
1,128,501 + RR42_RS25800 0.57 +0.2
1,128,502 - RR42_RS25800 0.57 -0.4
1,128,502 - RR42_RS25800 0.57 +0.3
1,128,502 - RR42_RS25800 0.57 +0.2
1,128,557 + RR42_RS25800 0.62 +0.0
1,128,557 + RR42_RS25800 0.62 -0.6
1,128,557 + RR42_RS25800 0.62 +0.2
1,128,563 + RR42_RS25800 0.63 +0.1
1,128,564 - RR42_RS25800 0.63 -0.0
1,128,688 + RR42_RS25800 0.74 -0.6
1,128,689 - RR42_RS25800 0.75 +0.2
1,128,850 - RR42_RS25800 0.89 +0.1
1,128,850 - RR42_RS25800 0.89 -0.2
1,128,888 - +0.5
1,128,896 - +0.3
1,128,896 - -0.1
1,128,948 + -0.5
1,128,948 + -0.2
1,128,948 + -0.1
1,128,949 - -0.4
1,128,949 - -0.7
1,128,974 + -0.3
1,128,974 + -0.2
1,128,974 + +0.6
1,128,974 + +0.2
1,128,975 - +0.6
1,128,975 - +0.1
1,129,078 + +2.2
1,129,079 - +0.9
1,129,079 - -0.9
1,129,291 - RR42_RS25805 0.18 -1.7
1,129,293 - RR42_RS25805 0.18 +0.1
1,129,293 - RR42_RS25805 0.18 +0.6
1,129,298 + RR42_RS25805 0.18 +0.5
1,129,298 + RR42_RS25805 0.18 +1.0
1,129,298 + RR42_RS25805 0.18 +0.4
1,129,299 - RR42_RS25805 0.18 +0.1
1,129,414 + RR42_RS25805 0.26 +0.3
1,129,503 + RR42_RS25805 0.33 -0.2
1,129,503 + RR42_RS25805 0.33 +0.5
1,129,503 + RR42_RS25805 0.33 +0.3
1,129,503 + RR42_RS25805 0.33 -0.6
1,129,503 + RR42_RS25805 0.33 +1.6
1,129,503 + RR42_RS25805 0.33 -0.9
1,129,503 + RR42_RS25805 0.33 -0.5
1,129,503 + RR42_RS25805 0.33 -0.0
1,129,503 + RR42_RS25805 0.33 +1.6
1,129,503 + RR42_RS25805 0.33 -1.8
1,129,504 - RR42_RS25805 0.33 +1.1
1,129,505 + RR42_RS25805 0.33 +0.4
1,129,505 + RR42_RS25805 0.33 +0.4
1,129,506 - RR42_RS25805 0.33 +0.6
1,129,506 - RR42_RS25805 0.33 +0.1
1,129,556 + RR42_RS25805 0.37 +0.6
1,129,591 + RR42_RS25805 0.39 -0.2
1,129,967 + RR42_RS25805 0.66 -0.1
1,129,967 + RR42_RS25805 0.66 -0.1
1,129,967 + RR42_RS25805 0.66 +0.1
1,129,967 + RR42_RS25805 0.66 -0.1
1,129,967 + RR42_RS25805 0.66 +0.7
1,130,018 + RR42_RS25805 0.70 +0.1
1,130,019 - RR42_RS25805 0.70 +0.1
1,130,215 + RR42_RS25805 0.84 -0.7
1,130,215 + RR42_RS25805 0.84 -0.6
1,130,216 - RR42_RS25805 0.84 +0.2
1,130,216 - RR42_RS25805 0.84 +0.2
1,130,216 - RR42_RS25805 0.84 +0.1
1,130,220 - RR42_RS25805 0.84 +2.2
1,130,230 + RR42_RS25805 0.85 +0.1
1,130,230 + RR42_RS25805 0.85 +0.5
1,130,231 - RR42_RS25805 0.85 -0.2
1,130,237 + RR42_RS25805 0.85 +0.1
1,130,237 + RR42_RS25805 0.85 +0.3
1,130,238 - RR42_RS25805 0.86 +0.1
1,130,298 + RR42_RS25805 0.90 -1.3
1,130,298 + RR42_RS25805 0.90 +0.3
1,130,457 + +0.2
1,130,460 + -1.8
1,130,460 + +0.2
1,130,460 + -0.5
1,130,525 - +1.2
1,130,525 - +3.2
1,130,532 + +0.6
1,130,532 + -0.4
1,130,532 + +0.2
1,130,532 + -0.2
1,130,532 + +0.2
1,130,533 - +0.1
1,130,590 + -0.6
1,130,591 - +0.7
1,130,591 - -0.8
1,130,591 - -0.1
1,130,591 - -0.5
1,130,716 + -1.3
1,130,716 + +0.3
1,130,736 + +0.3
1,130,737 - -1.5
1,130,824 + -0.1
1,130,824 + -0.9
1,130,862 + +0.1
1,130,868 + -0.1
1,131,064 + +0.1
1,131,065 - -0.3
1,131,065 - +1.1
1,131,173 + RR42_RS25810 0.44 +0.3
1,131,174 - RR42_RS25810 0.44 -0.4
1,131,175 + RR42_RS25810 0.44 +0.2
1,131,175 + RR42_RS25810 0.44 -0.3
1,131,175 + RR42_RS25810 0.44 -0.0
1,131,175 + RR42_RS25810 0.44 +0.7
1,131,176 - RR42_RS25810 0.45 +0.2
1,131,176 - RR42_RS25810 0.45 -1.1
1,131,176 - RR42_RS25810 0.45 +0.1
1,131,306 + -0.1
1,131,306 + -0.7
1,131,307 - -0.2
1,131,377 + -0.5
1,131,377 + -0.1

Or see this region's nucleotide sequence