Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25220 and RR42_RS25225 are separated by 10 nucleotides RR42_RS25225 and RR42_RS25230 overlap by 1 nucleotides
RR42_RS25220: RR42_RS25220 - NADP transhydrogenase subunit alpha, at 999,456 to 1,000,574
_RS25220
RR42_RS25225: RR42_RS25225 - NAD(P) transhydrogenase, at 1,000,585 to 1,000,908
_RS25225
RR42_RS25230: RR42_RS25230 - NAD synthetase, at 1,000,908 to 1,002,377
_RS25230
Position (kb) 1000
1001 Strain fitness (log2 ratio) -2
-1
0
1 at 999.765 kb on - strand, within RR42_RS25220 at 999.765 kb on - strand, within RR42_RS25220 at 999.838 kb on + strand, within RR42_RS25220 at 999.838 kb on + strand, within RR42_RS25220 at 999.839 kb on - strand, within RR42_RS25220 at 999.839 kb on - strand, within RR42_RS25220 at 999.839 kb on - strand, within RR42_RS25220 at 999.839 kb on - strand, within RR42_RS25220 at 999.897 kb on + strand, within RR42_RS25220 at 999.898 kb on - strand, within RR42_RS25220 at 1000.597 kb on - strand at 1000.639 kb on + strand, within RR42_RS25225 at 1000.640 kb on - strand, within RR42_RS25225 at 1000.881 kb on + strand at 1000.882 kb on - strand at 1000.944 kb on + strand at 1000.944 kb on + strand at 1001.185 kb on + strand, within RR42_RS25230 at 1001.428 kb on - strand, within RR42_RS25230 at 1001.652 kb on + strand, within RR42_RS25230 at 1001.652 kb on + strand at 1001.653 kb on - strand, within RR42_RS25230 at 1001.752 kb on - strand, within RR42_RS25230 at 1001.752 kb on - strand, within RR42_RS25230 at 1001.752 kb on - strand, within RR42_RS25230
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 999,765 - RR42_RS25220 0.28 -2.7 999,765 - RR42_RS25220 0.28 +0.1 999,838 + RR42_RS25220 0.34 +0.5 999,838 + RR42_RS25220 0.34 -0.1 999,839 - RR42_RS25220 0.34 -0.9 999,839 - RR42_RS25220 0.34 +1.2 999,839 - RR42_RS25220 0.34 +0.1 999,839 - RR42_RS25220 0.34 +0.6 999,897 + RR42_RS25220 0.39 -0.7 999,898 - RR42_RS25220 0.39 -0.2 1,000,597 - +0.3 1,000,639 + RR42_RS25225 0.17 -0.2 1,000,640 - RR42_RS25225 0.17 -1.2 1,000,881 + -0.6 1,000,882 - -1.0 1,000,944 + -0.1 1,000,944 + +0.7 1,001,185 + RR42_RS25230 0.19 +0.3 1,001,428 - RR42_RS25230 0.35 +0.9 1,001,652 + RR42_RS25230 0.51 -0.0 1,001,652 + +0.6 1,001,653 - RR42_RS25230 0.51 -1.3 1,001,752 - RR42_RS25230 0.57 -0.3 1,001,752 - RR42_RS25230 0.57 +0.1 1,001,752 - RR42_RS25230 0.57 +0.2
Or see this region's nucleotide sequence