Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25170 and RR42_RS25175 are separated by 208 nucleotides RR42_RS25175 and RR42_RS25180 are separated by 457 nucleotides
RR42_RS25170: RR42_RS25170 - hypothetical protein, at 987,318 to 987,689
_RS25170
RR42_RS25175: RR42_RS25175 - 3-keto-5-aminohexanoate cleavage protein, at 987,898 to 988,821
_RS25175
RR42_RS25180: RR42_RS25180 - AraC family transcriptional regulator, at 989,279 to 990,148
_RS25180
Position (kb) 987
988
989 Strain fitness (log2 ratio) -2
-1
0
1 at 987.017 kb on + strand at 987.038 kb on + strand at 987.039 kb on - strand at 987.039 kb on - strand at 987.039 kb on - strand at 987.145 kb on - strand at 987.145 kb on - strand at 987.149 kb on - strand at 987.731 kb on + strand at 987.732 kb on - strand at 987.853 kb on - strand at 987.897 kb on + strand at 987.897 kb on + strand at 987.897 kb on + strand at 987.898 kb on - strand at 987.903 kb on + strand at 987.904 kb on - strand at 987.943 kb on - strand at 987.962 kb on - strand at 987.962 kb on - strand at 987.962 kb on - strand at 987.966 kb on - strand at 988.159 kb on + strand, within RR42_RS25175 at 988.160 kb on - strand, within RR42_RS25175 at 988.348 kb on - strand, within RR42_RS25175 at 988.348 kb on - strand, within RR42_RS25175 at 988.405 kb on + strand, within RR42_RS25175 at 988.406 kb on - strand, within RR42_RS25175 at 988.406 kb on - strand, within RR42_RS25175 at 988.423 kb on + strand, within RR42_RS25175 at 989.100 kb on + strand at 989.129 kb on + strand at 989.293 kb on - strand at 989.319 kb on + strand at 989.568 kb on + strand, within RR42_RS25180 at 989.586 kb on - strand, within RR42_RS25180 at 989.694 kb on + strand, within RR42_RS25180 at 989.727 kb on - strand, within RR42_RS25180 at 989.727 kb on - strand, within RR42_RS25180
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 987,017 + +0.5 987,038 + -0.4 987,039 - -0.6 987,039 - +0.4 987,039 - +0.6 987,145 - -0.0 987,145 - +0.6 987,149 - -2.4 987,731 + -1.4 987,732 - +0.1 987,853 - -0.1 987,897 + -1.1 987,897 + -0.1 987,897 + +1.1 987,898 - -0.1 987,903 + -0.1 987,904 - -0.5 987,943 - -0.2 987,962 - -1.0 987,962 - +0.1 987,962 - +0.4 987,966 - +0.4 988,159 + RR42_RS25175 0.28 +0.5 988,160 - RR42_RS25175 0.28 -0.1 988,348 - RR42_RS25175 0.49 +0.6 988,348 - RR42_RS25175 0.49 -0.0 988,405 + RR42_RS25175 0.55 -0.2 988,406 - RR42_RS25175 0.55 +1.2 988,406 - RR42_RS25175 0.55 -0.1 988,423 + RR42_RS25175 0.57 +0.2 989,100 + -0.6 989,129 + +0.4 989,293 - -0.0 989,319 + -0.1 989,568 + RR42_RS25180 0.33 +1.4 989,586 - RR42_RS25180 0.35 +1.3 989,694 + RR42_RS25180 0.48 +0.5 989,727 - RR42_RS25180 0.51 -0.6 989,727 - RR42_RS25180 0.51 +0.3
Or see this region's nucleotide sequence