Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS25065 and RR42_RS25070 are separated by 159 nucleotides RR42_RS25070 and RR42_RS25075 are separated by 39 nucleotides
RR42_RS25065: RR42_RS25065 - 2-methylcitrate dehydratase, at 960,279 to 961,691
_RS25065
RR42_RS25070: RR42_RS25070 - membrane protein, at 961,851 to 963,149
_RS25070
RR42_RS25075: RR42_RS25075 - 2-methylcitrate dehydratase, at 963,189 to 964,598
_RS25075
Position (kb) 961
962
963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 961.202 kb on - strand, within RR42_RS25065 at 961.249 kb on + strand, within RR42_RS25065 at 961.250 kb on - strand, within RR42_RS25065 at 961.258 kb on + strand, within RR42_RS25065 at 961.399 kb on + strand, within RR42_RS25065 at 961.400 kb on - strand, within RR42_RS25065 at 961.400 kb on - strand, within RR42_RS25065 at 961.686 kb on - strand at 961.686 kb on - strand at 961.778 kb on + strand at 961.966 kb on + strand at 961.966 kb on + strand at 961.967 kb on - strand at 961.967 kb on - strand at 961.967 kb on - strand at 962.226 kb on - strand, within RR42_RS25070 at 962.722 kb on + strand, within RR42_RS25070 at 962.722 kb on + strand, within RR42_RS25070 at 962.743 kb on + strand, within RR42_RS25070 at 962.779 kb on - strand, within RR42_RS25070 at 962.830 kb on + strand, within RR42_RS25070 at 962.831 kb on - strand, within RR42_RS25070 at 962.962 kb on + strand, within RR42_RS25070 at 962.963 kb on - strand, within RR42_RS25070 at 963.080 kb on - strand at 963.080 kb on - strand at 963.389 kb on - strand, within RR42_RS25075 at 963.527 kb on - strand, within RR42_RS25075 at 963.541 kb on - strand, within RR42_RS25075 at 963.541 kb on - strand, within RR42_RS25075 at 963.626 kb on - strand, within RR42_RS25075 at 963.754 kb on + strand, within RR42_RS25075 at 963.754 kb on + strand, within RR42_RS25075 at 963.767 kb on - strand, within RR42_RS25075 at 963.988 kb on + strand, within RR42_RS25075 at 963.989 kb on - strand, within RR42_RS25075 at 964.002 kb on - strand, within RR42_RS25075 at 964.002 kb on - strand, within RR42_RS25075 at 964.002 kb on - strand, within RR42_RS25075 at 964.102 kb on + strand, within RR42_RS25075 at 964.102 kb on + strand, within RR42_RS25075 at 964.103 kb on - strand, within RR42_RS25075
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 961,202 - RR42_RS25065 0.65 -1.7 961,249 + RR42_RS25065 0.69 +0.5 961,250 - RR42_RS25065 0.69 -0.3 961,258 + RR42_RS25065 0.69 -0.3 961,399 + RR42_RS25065 0.79 +0.1 961,400 - RR42_RS25065 0.79 +0.1 961,400 - RR42_RS25065 0.79 +0.3 961,686 - +1.6 961,686 - +0.0 961,778 + -0.9 961,966 + +0.1 961,966 + +0.1 961,967 - -2.2 961,967 - -0.3 961,967 - +0.8 962,226 - RR42_RS25070 0.29 +0.0 962,722 + RR42_RS25070 0.67 -0.7 962,722 + RR42_RS25070 0.67 -0.7 962,743 + RR42_RS25070 0.69 -0.0 962,779 - RR42_RS25070 0.71 -1.8 962,830 + RR42_RS25070 0.75 +0.5 962,831 - RR42_RS25070 0.75 -1.8 962,962 + RR42_RS25070 0.86 -1.0 962,963 - RR42_RS25070 0.86 +0.2 963,080 - -0.0 963,080 - +0.3 963,389 - RR42_RS25075 0.14 -0.8 963,527 - RR42_RS25075 0.24 -3.1 963,541 - RR42_RS25075 0.25 -0.4 963,541 - RR42_RS25075 0.25 -0.9 963,626 - RR42_RS25075 0.31 -0.8 963,754 + RR42_RS25075 0.40 -0.8 963,754 + RR42_RS25075 0.40 +0.2 963,767 - RR42_RS25075 0.41 -0.3 963,988 + RR42_RS25075 0.57 -0.5 963,989 - RR42_RS25075 0.57 +0.1 964,002 - RR42_RS25075 0.58 -0.6 964,002 - RR42_RS25075 0.58 -0.1 964,002 - RR42_RS25075 0.58 -0.3 964,102 + RR42_RS25075 0.65 +0.9 964,102 + RR42_RS25075 0.65 -3.1 964,103 - RR42_RS25075 0.65 +0.3
Or see this region's nucleotide sequence