Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24920 and RR42_RS24925 are separated by 2 nucleotides RR42_RS24925 and RR42_RS24930 are separated by 105 nucleotides RR42_RS24930 and RR42_RS24935 are separated by 170 nucleotides
RR42_RS24920: RR42_RS24920 - MFS transporter, at 928,201 to 929,736
_RS24920
RR42_RS24925: RR42_RS24925 - LysR family transcriptional regulator, at 929,739 to 930,644
_RS24925
RR42_RS24930: RR42_RS24930 - AraC family transcriptional regulator, at 930,750 to 931,346
_RS24930
RR42_RS24935: RR42_RS24935 - formyl-CoA transferase, at 931,517 to 932,701
_RS24935
Position (kb) 929
930
931 Strain fitness (log2 ratio) -1
0
1 at 928.818 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.819 kb on + strand, within RR42_RS24920 at 928.856 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.032 kb on + strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.033 kb on - strand, within RR42_RS24920 at 929.036 kb on + strand, within RR42_RS24920 at 929.037 kb on - strand, within RR42_RS24920 at 929.045 kb on - strand, within RR42_RS24920 at 929.047 kb on + strand, within RR42_RS24920 at 929.068 kb on + strand, within RR42_RS24920 at 929.174 kb on - strand, within RR42_RS24920 at 929.431 kb on + strand, within RR42_RS24920 at 929.625 kb on + strand at 929.671 kb on + strand at 929.959 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.146 kb on - strand, within RR42_RS24925 at 930.166 kb on + strand, within RR42_RS24925 at 930.167 kb on - strand, within RR42_RS24925 at 930.177 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.264 kb on + strand, within RR42_RS24925 at 930.388 kb on + strand, within RR42_RS24925 at 930.389 kb on - strand, within RR42_RS24925 at 930.501 kb on + strand, within RR42_RS24925 at 930.502 kb on - strand, within RR42_RS24925 at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.564 kb on + strand at 930.565 kb on - strand at 930.688 kb on + strand at 930.689 kb on - strand at 930.718 kb on - strand at 931.016 kb on + strand, within RR42_RS24930 at 931.509 kb on + strand at 931.516 kb on + strand at 931.517 kb on - strand at 931.537 kb on + strand at 931.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 928,818 + RR42_RS24920 0.40 -0.7 928,819 + RR42_RS24920 0.40 -0.6 928,819 + RR42_RS24920 0.40 -0.6 928,819 + RR42_RS24920 0.40 -0.5 928,819 + RR42_RS24920 0.40 +0.2 928,856 + RR42_RS24920 0.43 -0.7 929,032 + RR42_RS24920 0.54 +0.3 929,032 + RR42_RS24920 0.54 +0.6 929,032 + RR42_RS24920 0.54 -0.6 929,033 - RR42_RS24920 0.54 -1.0 929,033 - RR42_RS24920 0.54 -0.8 929,033 - RR42_RS24920 0.54 +0.6 929,036 + RR42_RS24920 0.54 -0.6 929,037 - RR42_RS24920 0.54 +0.3 929,045 - RR42_RS24920 0.55 -0.1 929,047 + RR42_RS24920 0.55 -0.4 929,068 + RR42_RS24920 0.56 -0.6 929,174 - RR42_RS24920 0.63 -1.0 929,431 + RR42_RS24920 0.80 -0.5 929,625 + +0.1 929,671 + +0.3 929,959 - RR42_RS24925 0.24 +0.3 930,146 - RR42_RS24925 0.45 +0.8 930,146 - RR42_RS24925 0.45 +0.3 930,146 - RR42_RS24925 0.45 -1.0 930,166 + RR42_RS24925 0.47 -0.8 930,167 - RR42_RS24925 0.47 +0.4 930,177 + RR42_RS24925 0.48 +0.2 930,264 + RR42_RS24925 0.58 +0.4 930,264 + RR42_RS24925 0.58 +0.6 930,264 + RR42_RS24925 0.58 +0.5 930,388 + RR42_RS24925 0.72 -0.7 930,389 - RR42_RS24925 0.72 +0.2 930,501 + RR42_RS24925 0.84 -1.2 930,502 - RR42_RS24925 0.84 -0.0 930,564 + +0.3 930,564 + -0.2 930,564 + -0.4 930,564 + +1.1 930,565 - -0.8 930,688 + -1.0 930,689 - -0.5 930,718 - -0.4 931,016 + RR42_RS24930 0.45 -1.2 931,509 + -0.2 931,516 + +0.0 931,517 - -0.4 931,537 + -0.4 931,621 + +1.2
Or see this region's nucleotide sequence