Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24575 and RR42_RS24580 are separated by 59 nucleotides RR42_RS24580 and RR42_RS24585 are separated by 77 nucleotides
RR42_RS24575: RR42_RS24575 - endoribonuclease L-PSP, at 846,981 to 847,394
_RS24575
RR42_RS24580: RR42_RS24580 - hypothetical protein, at 847,454 to 848,818
_RS24580
RR42_RS24585: RR42_RS24585 - hypothetical protein, at 848,896 to 850,731
_RS24585
Position (kb) 847
848
849 Strain fitness (log2 ratio) -1
0
1 at 846.650 kb on - strand at 846.915 kb on - strand at 846.961 kb on + strand at 846.995 kb on + strand at 847.035 kb on + strand, within RR42_RS24575 at 847.036 kb on - strand, within RR42_RS24575 at 847.282 kb on - strand, within RR42_RS24575 at 847.437 kb on - strand at 847.500 kb on + strand at 847.500 kb on + strand at 847.501 kb on - strand at 847.580 kb on - strand at 847.638 kb on - strand, within RR42_RS24580 at 847.709 kb on + strand, within RR42_RS24580 at 847.709 kb on + strand, within RR42_RS24580 at 847.710 kb on - strand at 847.710 kb on - strand, within RR42_RS24580 at 847.778 kb on + strand, within RR42_RS24580 at 847.828 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.944 kb on - strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.946 kb on - strand, within RR42_RS24580 at 847.946 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 848.177 kb on + strand, within RR42_RS24580 at 848.178 kb on - strand, within RR42_RS24580 at 848.204 kb on + strand, within RR42_RS24580 at 848.204 kb on + strand, within RR42_RS24580 at 848.205 kb on - strand, within RR42_RS24580 at 848.207 kb on + strand, within RR42_RS24580 at 848.286 kb on - strand, within RR42_RS24580 at 848.372 kb on + strand, within RR42_RS24580 at 848.372 kb on + strand, within RR42_RS24580 at 848.390 kb on + strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.534 kb on + strand, within RR42_RS24580 at 848.535 kb on - strand, within RR42_RS24580 at 848.535 kb on - strand, within RR42_RS24580 at 848.576 kb on + strand, within RR42_RS24580 at 848.576 kb on + strand, within RR42_RS24580 at 848.577 kb on - strand, within RR42_RS24580 at 848.672 kb on + strand, within RR42_RS24580 at 848.672 kb on + strand, within RR42_RS24580 at 848.694 kb on - strand at 848.968 kb on + strand at 848.969 kb on - strand at 849.020 kb on + strand at 849.176 kb on - strand, within RR42_RS24585 at 849.184 kb on + strand, within RR42_RS24585 at 849.262 kb on + strand, within RR42_RS24585 at 849.370 kb on - strand, within RR42_RS24585 at 849.580 kb on + strand, within RR42_RS24585 at 849.580 kb on + strand, within RR42_RS24585 at 849.581 kb on - strand, within RR42_RS24585
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 846,650 - +1.1 846,915 - -0.3 846,961 + -0.2 846,995 + +0.2 847,035 + RR42_RS24575 0.13 -0.6 847,036 - RR42_RS24575 0.13 +0.0 847,282 - RR42_RS24575 0.73 -1.1 847,437 - +0.2 847,500 + -0.6 847,500 + +0.6 847,501 - +0.0 847,580 - +1.1 847,638 - RR42_RS24580 0.13 +0.3 847,709 + RR42_RS24580 0.19 -0.0 847,709 + RR42_RS24580 0.19 +0.1 847,710 - +0.6 847,710 - RR42_RS24580 0.19 -0.1 847,778 + RR42_RS24580 0.24 +0.7 847,828 + RR42_RS24580 0.27 +0.1 847,943 + RR42_RS24580 0.36 +0.2 847,943 + RR42_RS24580 0.36 -1.2 847,943 + RR42_RS24580 0.36 +0.5 847,943 + RR42_RS24580 0.36 +1.2 847,944 - RR42_RS24580 0.36 -0.6 847,945 + RR42_RS24580 0.36 -0.0 847,945 + RR42_RS24580 0.36 +0.2 847,945 + RR42_RS24580 0.36 +1.1 847,945 + RR42_RS24580 0.36 -0.1 847,946 - RR42_RS24580 0.36 -0.2 847,946 - RR42_RS24580 0.36 +0.8 847,950 - RR42_RS24580 0.36 +0.2 847,950 - RR42_RS24580 0.36 +0.5 847,950 - RR42_RS24580 0.36 +1.3 847,950 - RR42_RS24580 0.36 -0.3 847,950 - RR42_RS24580 0.36 +0.6 848,177 + RR42_RS24580 0.53 +0.5 848,178 - RR42_RS24580 0.53 +0.1 848,204 + RR42_RS24580 0.55 +0.1 848,204 + RR42_RS24580 0.55 -0.6 848,205 - RR42_RS24580 0.55 -0.5 848,207 + RR42_RS24580 0.55 +0.5 848,286 - RR42_RS24580 0.61 -0.4 848,372 + RR42_RS24580 0.67 -0.4 848,372 + RR42_RS24580 0.67 -0.4 848,390 + RR42_RS24580 0.69 -0.9 848,391 - RR42_RS24580 0.69 +1.1 848,391 - RR42_RS24580 0.69 +0.4 848,391 - RR42_RS24580 0.69 +0.8 848,534 + RR42_RS24580 0.79 -0.4 848,535 - RR42_RS24580 0.79 +0.0 848,535 - RR42_RS24580 0.79 -0.2 848,576 + RR42_RS24580 0.82 -0.8 848,576 + RR42_RS24580 0.82 -0.1 848,577 - RR42_RS24580 0.82 +1.2 848,672 + RR42_RS24580 0.89 +0.3 848,672 + RR42_RS24580 0.89 -0.2 848,694 - +1.1 848,968 + -0.0 848,969 - +0.2 849,020 + -0.9 849,176 - RR42_RS24585 0.15 +1.3 849,184 + RR42_RS24585 0.16 +0.2 849,262 + RR42_RS24585 0.20 +0.5 849,370 - RR42_RS24585 0.26 -0.4 849,580 + RR42_RS24585 0.37 +0.2 849,580 + RR42_RS24585 0.37 -0.8 849,581 - RR42_RS24585 0.37 +0.4
Or see this region's nucleotide sequence