Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23780 and RR42_RS23785 are separated by 305 nucleotides RR42_RS23785 and RR42_RS23790 are separated by 385 nucleotides
RR42_RS23780: RR42_RS23780 - hypothetical protein, at 658,815 to 659,753
_RS23780
RR42_RS23785: RR42_RS23785 - hypothetical protein, at 660,059 to 660,319
_RS23785
RR42_RS23790: RR42_RS23790 - hypothetical protein, at 660,705 to 662,045
_RS23790
Position (kb) 660
661 Strain fitness (log2 ratio) -2
-1
0
1 at 659.117 kb on - strand, within RR42_RS23780 at 659.124 kb on + strand, within RR42_RS23780 at 659.125 kb on - strand, within RR42_RS23780 at 659.129 kb on + strand, within RR42_RS23780 at 659.129 kb on + strand, within RR42_RS23780 at 659.129 kb on + strand, within RR42_RS23780 at 659.130 kb on - strand, within RR42_RS23780 at 659.263 kb on + strand, within RR42_RS23780 at 659.304 kb on + strand, within RR42_RS23780 at 659.304 kb on + strand, within RR42_RS23780 at 659.305 kb on - strand, within RR42_RS23780 at 659.306 kb on + strand, within RR42_RS23780 at 659.307 kb on - strand, within RR42_RS23780 at 659.558 kb on - strand, within RR42_RS23780 at 659.656 kb on - strand, within RR42_RS23780 at 659.656 kb on - strand, within RR42_RS23780 at 659.656 kb on - strand, within RR42_RS23780 at 659.656 kb on - strand, within RR42_RS23780 at 659.656 kb on - strand, within RR42_RS23780 at 659.656 kb on - strand, within RR42_RS23780 at 659.656 kb on - strand, within RR42_RS23780 at 659.819 kb on + strand at 659.819 kb on + strand at 659.819 kb on + strand at 659.903 kb on - strand at 659.903 kb on - strand at 659.903 kb on - strand at 659.934 kb on + strand at 660.068 kb on - strand at 660.075 kb on - strand at 660.095 kb on + strand, within RR42_RS23785 at 660.190 kb on + strand, within RR42_RS23785 at 660.190 kb on + strand, within RR42_RS23785 at 660.191 kb on - strand, within RR42_RS23785 at 660.191 kb on - strand, within RR42_RS23785 at 660.191 kb on - strand, within RR42_RS23785 at 660.193 kb on - strand, within RR42_RS23785 at 660.215 kb on + strand, within RR42_RS23785 at 660.215 kb on + strand, within RR42_RS23785 at 660.216 kb on - strand, within RR42_RS23785 at 660.216 kb on - strand, within RR42_RS23785 at 660.317 kb on + strand at 660.320 kb on + strand at 660.321 kb on - strand at 660.329 kb on - strand at 660.330 kb on + strand at 660.330 kb on + strand at 660.331 kb on - strand at 660.331 kb on - strand at 660.380 kb on + strand at 660.381 kb on - strand at 660.381 kb on - strand at 660.426 kb on + strand at 660.426 kb on + strand at 660.533 kb on + strand at 660.534 kb on - strand at 660.534 kb on - strand at 660.536 kb on + strand at 660.536 kb on + strand at 660.536 kb on + strand at 660.537 kb on - strand at 660.547 kb on - strand at 660.589 kb on - strand at 660.589 kb on - strand at 660.678 kb on + strand at 660.678 kb on + strand at 660.678 kb on + strand at 660.678 kb on + strand at 660.679 kb on - strand at 660.777 kb on + strand at 660.778 kb on - strand at 660.801 kb on + strand at 660.801 kb on + strand at 660.801 kb on + strand at 660.801 kb on + strand at 660.801 kb on + strand at 660.802 kb on - strand at 660.802 kb on - strand at 660.802 kb on - strand at 660.802 kb on - strand at 660.804 kb on - strand at 660.832 kb on + strand at 660.832 kb on + strand at 660.832 kb on + strand at 660.833 kb on - strand at 660.833 kb on - strand at 660.833 kb on - strand at 660.907 kb on - strand, within RR42_RS23790 at 661.007 kb on - strand, within RR42_RS23790 at 661.074 kb on + strand, within RR42_RS23790 at 661.160 kb on + strand, within RR42_RS23790 at 661.239 kb on + strand, within RR42_RS23790
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 659,117 - RR42_RS23780 0.32 -0.2 659,124 + RR42_RS23780 0.33 -0.1 659,125 - RR42_RS23780 0.33 +0.0 659,129 + RR42_RS23780 0.33 -0.2 659,129 + RR42_RS23780 0.33 -1.2 659,129 + RR42_RS23780 0.33 -0.5 659,130 - RR42_RS23780 0.34 +0.7 659,263 + RR42_RS23780 0.48 -0.8 659,304 + RR42_RS23780 0.52 +0.2 659,304 + RR42_RS23780 0.52 -0.1 659,305 - RR42_RS23780 0.52 -0.9 659,306 + RR42_RS23780 0.52 -2.1 659,307 - RR42_RS23780 0.52 -0.0 659,558 - RR42_RS23780 0.79 +0.2 659,656 - RR42_RS23780 0.90 -0.8 659,656 - RR42_RS23780 0.90 +1.5 659,656 - RR42_RS23780 0.90 +1.4 659,656 - RR42_RS23780 0.90 -0.9 659,656 - RR42_RS23780 0.90 -0.8 659,656 - RR42_RS23780 0.90 -0.5 659,656 - RR42_RS23780 0.90 -0.1 659,819 + -0.2 659,819 + +0.4 659,819 + -0.2 659,903 - +0.9 659,903 - +1.1 659,903 - +0.7 659,934 + -0.9 660,068 - +0.4 660,075 - -0.3 660,095 + RR42_RS23785 0.14 -0.1 660,190 + RR42_RS23785 0.50 -0.1 660,190 + RR42_RS23785 0.50 +0.0 660,191 - RR42_RS23785 0.51 -0.2 660,191 - RR42_RS23785 0.51 +0.4 660,191 - RR42_RS23785 0.51 +0.5 660,193 - RR42_RS23785 0.51 +0.4 660,215 + RR42_RS23785 0.60 +0.8 660,215 + RR42_RS23785 0.60 -0.3 660,216 - RR42_RS23785 0.60 +0.6 660,216 - RR42_RS23785 0.60 +0.0 660,317 + -0.7 660,320 + +0.1 660,321 - +0.7 660,329 - +1.4 660,330 + +0.2 660,330 + +0.5 660,331 - -0.3 660,331 - +0.3 660,380 + -0.3 660,381 - -0.7 660,381 - -0.3 660,426 + -0.0 660,426 + +0.1 660,533 + -0.3 660,534 - -0.3 660,534 - -0.3 660,536 + -0.1 660,536 + -0.1 660,536 + +0.5 660,537 - +1.2 660,547 - -0.4 660,589 - +0.0 660,589 - +0.0 660,678 + -0.5 660,678 + +1.0 660,678 + +0.1 660,678 + +0.3 660,679 - -1.0 660,777 + +0.8 660,778 - -0.7 660,801 + -0.1 660,801 + -0.2 660,801 + +0.8 660,801 + -1.7 660,801 + +0.3 660,802 - -0.3 660,802 - +0.0 660,802 - -0.6 660,802 - +0.0 660,804 - +0.1 660,832 + +0.5 660,832 + -0.1 660,832 + -0.3 660,833 - +1.0 660,833 - +0.0 660,833 - -0.7 660,907 - RR42_RS23790 0.15 +0.7 661,007 - RR42_RS23790 0.23 +0.1 661,074 + RR42_RS23790 0.28 -0.7 661,160 + RR42_RS23790 0.34 +0.2 661,239 + RR42_RS23790 0.40 -0.1
Or see this region's nucleotide sequence