Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23120

Experiment: R2A 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23115 and RR42_RS23120 are separated by 498 nucleotidesRR42_RS23120 and RR42_RS23125 are separated by 32 nucleotidesRR42_RS23125 and RR42_RS23130 are separated by 39 nucleotidesRR42_RS23130 and RR42_RS23135 are separated by 17 nucleotides RR42_RS23115: RR42_RS23115 - serine hydrolase, at 519,692 to 521,401 _RS23115 RR42_RS23120: RR42_RS23120 - hypothetical protein, at 521,900 to 522,226 _RS23120 RR42_RS23125: RR42_RS23125 - hypothetical protein, at 522,259 to 522,546 _RS23125 RR42_RS23130: RR42_RS23130 - bleomycin resistance protein, at 522,586 to 522,951 _RS23130 RR42_RS23135: RR42_RS23135 - trans-2-enoyl-CoA reductase, at 522,969 to 524,165 _RS23135 Position (kb) 521 522 523Strain fitness (log2 ratio) -2 -1 0 1 2at 520.956 kb on + strand, within RR42_RS23115at 520.962 kb on + strand, within RR42_RS23115at 520.963 kb on - strand, within RR42_RS23115at 521.145 kb on + strand, within RR42_RS23115at 521.146 kb on - strand, within RR42_RS23115at 521.292 kb on + strandat 521.292 kb on + strandat 521.437 kb on - strandat 521.505 kb on + strandat 521.505 kb on + strandat 521.793 kb on - strandat 521.916 kb on + strandat 521.917 kb on - strandat 521.917 kb on - strandat 522.040 kb on + strand, within RR42_RS23120at 522.040 kb on + strand, within RR42_RS23120at 522.040 kb on + strand, within RR42_RS23120at 522.041 kb on - strand, within RR42_RS23120at 522.130 kb on - strand, within RR42_RS23120at 522.236 kb on + strandat 522.237 kb on - strandat 522.237 kb on - strandat 522.237 kb on - strandat 522.391 kb on - strand, within RR42_RS23125at 522.540 kb on - strandat 522.540 kb on - strandat 522.540 kb on - strandat 522.587 kb on + strandat 522.587 kb on + strandat 522.598 kb on + strandat 522.598 kb on + strandat 522.693 kb on - strand, within RR42_RS23130at 522.825 kb on - strand, within RR42_RS23130at 522.879 kb on - strand, within RR42_RS23130at 522.887 kb on + strand, within RR42_RS23130at 523.073 kb on - strandat 523.100 kb on + strand, within RR42_RS23135at 523.100 kb on + strand, within RR42_RS23135at 523.101 kb on - strand, within RR42_RS23135at 523.101 kb on - strand, within RR42_RS23135at 523.101 kb on - strand, within RR42_RS23135at 523.134 kb on + strand, within RR42_RS23135at 523.135 kb on - strand, within RR42_RS23135at 523.135 kb on - strand, within RR42_RS23135at 523.216 kb on + strand, within RR42_RS23135at 523.217 kb on - strand, within RR42_RS23135at 523.217 kb on - strand, within RR42_RS23135

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 37C
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520,956 + RR42_RS23115 0.74 -1.0
520,962 + RR42_RS23115 0.74 -1.0
520,963 - RR42_RS23115 0.74 -0.6
521,145 + RR42_RS23115 0.85 +0.4
521,146 - RR42_RS23115 0.85 +1.1
521,292 + -0.1
521,292 + +0.8
521,437 - +0.1
521,505 + -0.0
521,505 + -0.8
521,793 - -0.3
521,916 + +0.3
521,917 - -0.3
521,917 - -2.0
522,040 + RR42_RS23120 0.43 -0.6
522,040 + RR42_RS23120 0.43 -0.6
522,040 + RR42_RS23120 0.43 +0.5
522,041 - RR42_RS23120 0.43 -0.3
522,130 - RR42_RS23120 0.70 -1.2
522,236 + -0.6
522,237 - +1.9
522,237 - +0.1
522,237 - +0.1
522,391 - RR42_RS23125 0.46 -0.2
522,540 - -0.8
522,540 - -0.8
522,540 - -1.6
522,587 + -0.5
522,587 + +1.3
522,598 + +0.3
522,598 + +0.2
522,693 - RR42_RS23130 0.29 +0.4
522,825 - RR42_RS23130 0.65 -0.1
522,879 - RR42_RS23130 0.80 +1.0
522,887 + RR42_RS23130 0.82 +1.0
523,073 - +0.2
523,100 + RR42_RS23135 0.11 +0.0
523,100 + RR42_RS23135 0.11 -0.9
523,101 - RR42_RS23135 0.11 +0.3
523,101 - RR42_RS23135 0.11 -0.2
523,101 - RR42_RS23135 0.11 -0.1
523,134 + RR42_RS23135 0.14 -0.8
523,135 - RR42_RS23135 0.14 -1.4
523,135 - RR42_RS23135 0.14 -0.5
523,216 + RR42_RS23135 0.21 -0.6
523,217 - RR42_RS23135 0.21 +0.2
523,217 - RR42_RS23135 0.21 +0.6

Or see this region's nucleotide sequence