Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21015 and RR42_RS21020 are separated by 230 nucleotides RR42_RS21020 and RR42_RS21025 are separated by 70 nucleotides RR42_RS21025 and RR42_RS21030 are separated by 250 nucleotides RR42_RS21030 and RR42_RS21035 are separated by 33 nucleotides
RR42_RS21015: RR42_RS21015 - mannose-1-phosphate guanyltransferase, at 43,051 to 44,475
_RS21015
RR42_RS21020: RR42_RS21020 - hypothetical protein, at 44,706 to 45,038
_RS21020
RR42_RS21025: RR42_RS21025 - lipoprotein, at 45,109 to 45,228
_RS21025
RR42_RS21030: RR42_RS21030 - hypothetical protein, at 45,479 to 45,658
_RS21030
RR42_RS21035: RR42_RS21035 - GntR family transcriptional regulator, at 45,692 to 46,408
_RS21035
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1 at 43.712 kb on + strand, within RR42_RS21015 at 43.850 kb on + strand, within RR42_RS21015 at 43.851 kb on - strand, within RR42_RS21015 at 43.996 kb on - strand, within RR42_RS21015 at 43.996 kb on - strand, within RR42_RS21015 at 43.997 kb on + strand, within RR42_RS21015 at 43.997 kb on + strand, within RR42_RS21015 at 44.452 kb on + strand at 44.582 kb on - strand at 44.824 kb on + strand, within RR42_RS21020 at 44.824 kb on + strand, within RR42_RS21020 at 44.825 kb on - strand, within RR42_RS21020 at 44.924 kb on + strand, within RR42_RS21020 at 44.941 kb on + strand, within RR42_RS21020 at 45.274 kb on + strand at 45.309 kb on + strand at 45.309 kb on + strand at 45.309 kb on + strand at 45.480 kb on + strand at 45.481 kb on - strand at 45.683 kb on + strand at 45.693 kb on + strand at 45.889 kb on - strand, within RR42_RS21035
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 43,712 + RR42_RS21015 0.46 -0.2 43,850 + RR42_RS21015 0.56 +0.8 43,851 - RR42_RS21015 0.56 +1.2 43,996 - RR42_RS21015 0.66 -0.1 43,996 - RR42_RS21015 0.66 +0.3 43,997 + RR42_RS21015 0.66 +0.2 43,997 + RR42_RS21015 0.66 +1.5 44,452 + -2.2 44,582 - -1.9 44,824 + RR42_RS21020 0.35 +0.1 44,824 + RR42_RS21020 0.35 -0.9 44,825 - RR42_RS21020 0.36 -0.5 44,924 + RR42_RS21020 0.65 +0.5 44,941 + RR42_RS21020 0.71 -1.7 45,274 + -0.2 45,309 + +0.6 45,309 + -0.2 45,309 + -0.2 45,480 + +1.3 45,481 - -0.3 45,683 + -0.2 45,693 + -0.1 45,889 - RR42_RS21035 0.27 +0.1
Or see this region's nucleotide sequence