Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20995 and RR42_RS21000 are separated by 120 nucleotides RR42_RS21000 and RR42_RS21005 are separated by 1 nucleotides
RR42_RS20995: RR42_RS20995 - glycosyl transferase, at 38,338 to 39,600
_RS20995
RR42_RS21000: RR42_RS21000 - glycosyl transferase, at 39,721 to 40,803
_RS21000
RR42_RS21005: RR42_RS21005 - GDP-L-fucose synthase, at 40,805 to 41,797
_RS21005
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2 at 38.899 kb on - strand, within RR42_RS20995 at 38.910 kb on - strand, within RR42_RS20995 at 38.910 kb on - strand, within RR42_RS20995 at 39.428 kb on + strand, within RR42_RS20995 at 39.429 kb on - strand, within RR42_RS20995 at 39.429 kb on - strand, within RR42_RS20995 at 39.473 kb on + strand, within RR42_RS20995 at 39.542 kb on + strand at 39.543 kb on - strand at 39.543 kb on - strand at 39.572 kb on + strand at 39.572 kb on + strand at 39.573 kb on - strand at 39.573 kb on - strand at 39.573 kb on - strand at 39.584 kb on + strand at 39.584 kb on + strand at 39.585 kb on - strand at 39.585 kb on - strand at 39.592 kb on + strand at 39.609 kb on + strand at 39.634 kb on + strand at 39.706 kb on + strand at 39.972 kb on - strand, within RR42_RS21000 at 40.047 kb on - strand, within RR42_RS21000 at 41.097 kb on + strand, within RR42_RS21005 at 41.274 kb on + strand, within RR42_RS21005 at 41.274 kb on + strand, within RR42_RS21005 at 41.343 kb on + strand, within RR42_RS21005 at 41.386 kb on - strand, within RR42_RS21005 at 41.477 kb on + strand, within RR42_RS21005 at 41.478 kb on - strand, within RR42_RS21005 at 41.613 kb on + strand, within RR42_RS21005 at 41.613 kb on + strand, within RR42_RS21005 at 41.614 kb on - strand, within RR42_RS21005
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 38,899 - RR42_RS20995 0.44 -0.1 38,910 - RR42_RS20995 0.45 +0.3 38,910 - RR42_RS20995 0.45 +0.0 39,428 + RR42_RS20995 0.86 -0.9 39,429 - RR42_RS20995 0.86 +0.0 39,429 - RR42_RS20995 0.86 -0.6 39,473 + RR42_RS20995 0.90 -0.7 39,542 + +0.0 39,543 - -1.4 39,543 - +1.0 39,572 + -0.1 39,572 + +0.6 39,573 - +0.3 39,573 - +0.5 39,573 - +0.4 39,584 + +0.1 39,584 + -0.5 39,585 - +2.5 39,585 - -0.1 39,592 + -0.7 39,609 + +0.3 39,634 + -0.0 39,706 + -0.1 39,972 - RR42_RS21000 0.23 -2.2 40,047 - RR42_RS21000 0.30 -1.0 41,097 + RR42_RS21005 0.29 -0.5 41,274 + RR42_RS21005 0.47 -0.8 41,274 + RR42_RS21005 0.47 -0.1 41,343 + RR42_RS21005 0.54 -1.1 41,386 - RR42_RS21005 0.59 -0.1 41,477 + RR42_RS21005 0.68 -0.1 41,478 - RR42_RS21005 0.68 -0.7 41,613 + RR42_RS21005 0.81 +0.9 41,613 + RR42_RS21005 0.81 -0.2 41,614 - RR42_RS21005 0.81 +0.4
Or see this region's nucleotide sequence