Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20075

Experiment: R2A 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20070 and RR42_RS20075 are separated by 113 nucleotidesRR42_RS20075 and RR42_RS20080 are separated by 31 nucleotides RR42_RS20070: RR42_RS20070 - glycine dehydrogenase, at 4,336,020 to 4,338,941 _RS20070 RR42_RS20075: RR42_RS20075 - hypothetical protein, at 4,339,055 to 4,339,597 _RS20075 RR42_RS20080: RR42_RS20080 - L-serine ammonia-lyase (EC 4.3.1.17) (from data), at 4,339,629 to 4,341,005 _RS20080 Position (kb) 4339 4340Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4338.087 kb on + strand, within RR42_RS20070at 4338.088 kb on - strand, within RR42_RS20070at 4338.357 kb on + strand, within RR42_RS20070at 4338.357 kb on + strand, within RR42_RS20070at 4338.358 kb on - strand, within RR42_RS20070at 4338.358 kb on - strand, within RR42_RS20070at 4338.358 kb on - strand, within RR42_RS20070at 4338.358 kb on - strand, within RR42_RS20070at 4338.358 kb on - strand, within RR42_RS20070at 4338.423 kb on + strand, within RR42_RS20070at 4338.424 kb on - strand, within RR42_RS20070at 4338.424 kb on - strand, within RR42_RS20070at 4338.424 kb on - strand, within RR42_RS20070at 4338.424 kb on - strand, within RR42_RS20070at 4338.424 kb on - strand, within RR42_RS20070at 4338.424 kb on - strand, within RR42_RS20070at 4338.508 kb on + strand, within RR42_RS20070at 4338.508 kb on + strand, within RR42_RS20070at 4338.570 kb on + strand, within RR42_RS20070at 4338.570 kb on + strand, within RR42_RS20070at 4338.665 kb on + strandat 4338.798 kb on + strandat 4338.798 kb on + strandat 4338.798 kb on + strandat 4338.798 kb on + strandat 4338.798 kb on + strandat 4338.799 kb on - strandat 4338.799 kb on - strandat 4338.850 kb on - strandat 4338.882 kb on + strandat 4338.927 kb on + strandat 4338.927 kb on + strandat 4338.928 kb on - strandat 4338.939 kb on + strandat 4338.939 kb on + strandat 4338.940 kb on - strandat 4339.165 kb on + strand, within RR42_RS20075at 4339.166 kb on - strand, within RR42_RS20075at 4339.166 kb on - strand, within RR42_RS20075at 4339.166 kb on - strand, within RR42_RS20075at 4339.166 kb on - strand, within RR42_RS20075at 4339.353 kb on + strand, within RR42_RS20075at 4339.353 kb on + strand, within RR42_RS20075at 4339.354 kb on - strand, within RR42_RS20075at 4339.625 kb on + strandat 4339.779 kb on + strand, within RR42_RS20080at 4339.779 kb on + strand, within RR42_RS20080at 4339.779 kb on + strand, within RR42_RS20080at 4339.780 kb on - strand, within RR42_RS20080at 4339.780 kb on - strand, within RR42_RS20080at 4339.780 kb on - strand, within RR42_RS20080at 4340.061 kb on + strand, within RR42_RS20080at 4340.061 kb on + strand, within RR42_RS20080at 4340.108 kb on + strand, within RR42_RS20080at 4340.108 kb on + strand, within RR42_RS20080at 4340.115 kb on - strand, within RR42_RS20080at 4340.419 kb on + strand, within RR42_RS20080at 4340.439 kb on + strand, within RR42_RS20080at 4340.439 kb on + strand, within RR42_RS20080at 4340.439 kb on + strand, within RR42_RS20080at 4340.535 kb on + strand, within RR42_RS20080at 4340.535 kb on + strand, within RR42_RS20080at 4340.536 kb on - strand, within RR42_RS20080at 4340.536 kb on - strand, within RR42_RS20080at 4340.536 kb on - strand, within RR42_RS20080at 4340.536 kb on - strand, within RR42_RS20080at 4340.538 kb on + strand, within RR42_RS20080at 4340.538 kb on + strand, within RR42_RS20080at 4340.539 kb on - strand, within RR42_RS20080at 4340.539 kb on - strand, within RR42_RS20080

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 37C
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4,338,087 + RR42_RS20070 0.71 +0.3
4,338,088 - RR42_RS20070 0.71 -0.5
4,338,357 + RR42_RS20070 0.80 -0.4
4,338,357 + RR42_RS20070 0.80 -0.1
4,338,358 - RR42_RS20070 0.80 -0.1
4,338,358 - RR42_RS20070 0.80 +0.4
4,338,358 - RR42_RS20070 0.80 +0.8
4,338,358 - RR42_RS20070 0.80 +0.6
4,338,358 - RR42_RS20070 0.80 +0.3
4,338,423 + RR42_RS20070 0.82 -0.2
4,338,424 - RR42_RS20070 0.82 -0.7
4,338,424 - RR42_RS20070 0.82 +1.8
4,338,424 - RR42_RS20070 0.82 -0.5
4,338,424 - RR42_RS20070 0.82 -1.4
4,338,424 - RR42_RS20070 0.82 +0.2
4,338,424 - RR42_RS20070 0.82 +1.3
4,338,508 + RR42_RS20070 0.85 +0.8
4,338,508 + RR42_RS20070 0.85 -0.5
4,338,570 + RR42_RS20070 0.87 -0.0
4,338,570 + RR42_RS20070 0.87 -0.6
4,338,665 + +3.6
4,338,798 + -0.4
4,338,798 + -0.2
4,338,798 + +0.6
4,338,798 + -0.5
4,338,798 + -0.3
4,338,799 - -0.0
4,338,799 - +0.6
4,338,850 - +0.0
4,338,882 + -0.0
4,338,927 + +0.3
4,338,927 + +0.3
4,338,928 - +0.0
4,338,939 + +0.1
4,338,939 + -0.4
4,338,940 - -0.4
4,339,165 + RR42_RS20075 0.20 +0.5
4,339,166 - RR42_RS20075 0.20 -0.4
4,339,166 - RR42_RS20075 0.20 -0.3
4,339,166 - RR42_RS20075 0.20 -2.9
4,339,166 - RR42_RS20075 0.20 -0.5
4,339,353 + RR42_RS20075 0.55 -0.6
4,339,353 + RR42_RS20075 0.55 -0.6
4,339,354 - RR42_RS20075 0.55 -0.6
4,339,625 + -0.6
4,339,779 + RR42_RS20080 0.11 -0.0
4,339,779 + RR42_RS20080 0.11 +0.6
4,339,779 + RR42_RS20080 0.11 -1.3
4,339,780 - RR42_RS20080 0.11 +0.8
4,339,780 - RR42_RS20080 0.11 +0.2
4,339,780 - RR42_RS20080 0.11 -0.1
4,340,061 + RR42_RS20080 0.31 -1.2
4,340,061 + RR42_RS20080 0.31 +0.2
4,340,108 + RR42_RS20080 0.35 +0.4
4,340,108 + RR42_RS20080 0.35 +0.2
4,340,115 - RR42_RS20080 0.35 +1.1
4,340,419 + RR42_RS20080 0.57 -0.1
4,340,439 + RR42_RS20080 0.59 +0.2
4,340,439 + RR42_RS20080 0.59 +0.1
4,340,439 + RR42_RS20080 0.59 +0.3
4,340,535 + RR42_RS20080 0.66 -1.8
4,340,535 + RR42_RS20080 0.66 -1.3
4,340,536 - RR42_RS20080 0.66 -0.4
4,340,536 - RR42_RS20080 0.66 +0.1
4,340,536 - RR42_RS20080 0.66 -0.6
4,340,536 - RR42_RS20080 0.66 +0.4
4,340,538 + RR42_RS20080 0.66 +2.3
4,340,538 + RR42_RS20080 0.66 +0.1
4,340,539 - RR42_RS20080 0.66 -0.4
4,340,539 - RR42_RS20080 0.66 -0.2

Or see this region's nucleotide sequence