Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19875

Experiment: R2A 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19870 and RR42_RS19875 are separated by 101 nucleotidesRR42_RS19875 and RR42_RS19880 are separated by 247 nucleotides RR42_RS19870: RR42_RS19870 - pyruvate kinase, at 4,290,002 to 4,291,480 _RS19870 RR42_RS19875: RR42_RS19875 - metalloprotease, at 4,291,582 to 4,292,475 _RS19875 RR42_RS19880: RR42_RS19880 - hypothetical protein, at 4,292,723 to 4,292,950 _RS19880 Position (kb) 4291 4292 4293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4290.899 kb on + strand, within RR42_RS19870at 4290.900 kb on - strand, within RR42_RS19870at 4290.900 kb on - strand, within RR42_RS19870at 4290.900 kb on - strand, within RR42_RS19870at 4291.128 kb on - strand, within RR42_RS19870at 4291.128 kb on - strand, within RR42_RS19870at 4291.323 kb on - strand, within RR42_RS19870at 4291.517 kb on + strandat 4291.517 kb on + strandat 4291.517 kb on + strandat 4291.517 kb on + strandat 4291.518 kb on - strandat 4291.518 kb on - strandat 4291.518 kb on - strandat 4291.518 kb on - strandat 4291.520 kb on - strandat 4291.567 kb on + strandat 4291.567 kb on + strandat 4291.568 kb on - strandat 4291.616 kb on + strandat 4291.616 kb on + strandat 4291.616 kb on + strandat 4291.616 kb on + strandat 4291.617 kb on - strandat 4291.717 kb on + strand, within RR42_RS19875at 4291.887 kb on + strand, within RR42_RS19875at 4291.887 kb on + strand, within RR42_RS19875at 4291.887 kb on + strand, within RR42_RS19875at 4291.888 kb on - strand, within RR42_RS19875at 4291.915 kb on + strand, within RR42_RS19875at 4291.996 kb on + strand, within RR42_RS19875at 4292.020 kb on + strand, within RR42_RS19875at 4292.020 kb on + strand, within RR42_RS19875at 4292.020 kb on + strand, within RR42_RS19875at 4292.021 kb on - strand, within RR42_RS19875at 4292.021 kb on - strand, within RR42_RS19875at 4292.089 kb on + strand, within RR42_RS19875at 4292.089 kb on + strand, within RR42_RS19875at 4292.089 kb on + strand, within RR42_RS19875at 4292.089 kb on + strand, within RR42_RS19875at 4292.089 kb on + strand, within RR42_RS19875at 4292.090 kb on - strand, within RR42_RS19875at 4292.090 kb on - strand, within RR42_RS19875at 4292.090 kb on - strand, within RR42_RS19875at 4292.356 kb on + strand, within RR42_RS19875at 4292.356 kb on + strand, within RR42_RS19875at 4292.357 kb on - strand, within RR42_RS19875at 4292.543 kb on - strandat 4292.575 kb on + strandat 4292.575 kb on + strandat 4292.595 kb on + strandat 4292.658 kb on + strandat 4292.855 kb on + strand, within RR42_RS19880at 4292.872 kb on - strand, within RR42_RS19880at 4292.873 kb on + strand, within RR42_RS19880at 4292.873 kb on + strand, within RR42_RS19880at 4292.873 kb on + strand, within RR42_RS19880at 4292.874 kb on - strand, within RR42_RS19880at 4292.874 kb on - strand, within RR42_RS19880at 4293.011 kb on + strandat 4293.011 kb on + strandat 4293.011 kb on + strandat 4293.011 kb on + strandat 4293.011 kb on + strandat 4293.012 kb on - strandat 4293.044 kb on + strandat 4293.044 kb on + strandat 4293.194 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 37C
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4,290,899 + RR42_RS19870 0.61 +0.3
4,290,900 - RR42_RS19870 0.61 +1.6
4,290,900 - RR42_RS19870 0.61 -0.2
4,290,900 - RR42_RS19870 0.61 -0.2
4,291,128 - RR42_RS19870 0.76 -0.7
4,291,128 - RR42_RS19870 0.76 -0.1
4,291,323 - RR42_RS19870 0.89 -0.5
4,291,517 + +0.8
4,291,517 + -1.1
4,291,517 + +0.2
4,291,517 + -0.8
4,291,518 - +0.3
4,291,518 - -0.2
4,291,518 - +0.6
4,291,518 - -0.5
4,291,520 - -0.3
4,291,567 + +0.2
4,291,567 + -0.0
4,291,568 - -0.2
4,291,616 + -3.0
4,291,616 + -3.1
4,291,616 + -0.1
4,291,616 + -0.0
4,291,617 - -1.3
4,291,717 + RR42_RS19875 0.15 -1.0
4,291,887 + RR42_RS19875 0.34 -0.7
4,291,887 + RR42_RS19875 0.34 -0.8
4,291,887 + RR42_RS19875 0.34 -1.0
4,291,888 - RR42_RS19875 0.34 -0.9
4,291,915 + RR42_RS19875 0.37 +0.3
4,291,996 + RR42_RS19875 0.46 -0.0
4,292,020 + RR42_RS19875 0.49 -0.2
4,292,020 + RR42_RS19875 0.49 -1.3
4,292,020 + RR42_RS19875 0.49 -1.7
4,292,021 - RR42_RS19875 0.49 -0.9
4,292,021 - RR42_RS19875 0.49 -1.4
4,292,089 + RR42_RS19875 0.57 -4.1
4,292,089 + RR42_RS19875 0.57 -1.7
4,292,089 + RR42_RS19875 0.57 -0.3
4,292,089 + RR42_RS19875 0.57 -1.4
4,292,089 + RR42_RS19875 0.57 -0.5
4,292,090 - RR42_RS19875 0.57 -1.0
4,292,090 - RR42_RS19875 0.57 -0.5
4,292,090 - RR42_RS19875 0.57 -1.0
4,292,356 + RR42_RS19875 0.87 -2.7
4,292,356 + RR42_RS19875 0.87 +1.0
4,292,357 - RR42_RS19875 0.87 -2.2
4,292,543 - +1.0
4,292,575 + +0.0
4,292,575 + -0.4
4,292,595 + -0.1
4,292,658 + +0.1
4,292,855 + RR42_RS19880 0.58 +0.6
4,292,872 - RR42_RS19880 0.65 +0.4
4,292,873 + RR42_RS19880 0.66 -0.4
4,292,873 + RR42_RS19880 0.66 -1.0
4,292,873 + RR42_RS19880 0.66 +0.9
4,292,874 - RR42_RS19880 0.66 -0.8
4,292,874 - RR42_RS19880 0.66 -1.3
4,293,011 + -0.3
4,293,011 + -0.8
4,293,011 + -0.3
4,293,011 + +1.5
4,293,011 + -0.1
4,293,012 - -0.2
4,293,044 + -0.8
4,293,044 + -0.4
4,293,194 + +0.6

Or see this region's nucleotide sequence