Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08785 and RR42_RS08790 are separated by 157 nucleotides RR42_RS08790 and RR42_RS08795 are separated by 50 nucleotides RR42_RS08795 and RR42_RS08800 are separated by 140 nucleotides RR42_RS08800 and RR42_RS08805 are separated by 52 nucleotides
RR42_RS08785: RR42_RS08785 - lipid carrier protein, at 1,841,740 to 1,842,192
_RS08785
RR42_RS08790: RR42_RS08790 - zinc-binding protein, at 1,842,350 to 1,842,799
_RS08790
RR42_RS08795: RR42_RS08795 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 1,842,850 to 1,843,428
_RS08795
RR42_RS08800: RR42_RS08800 - peptidylprolyl isomerase, at 1,843,569 to 1,844,315
_RS08800
RR42_RS08805: RR42_RS08805 - nitrate reductase, at 1,844,368 to 1,845,051
_RS08805
Position (kb) 1842
1843
1844 Strain fitness (log2 ratio) -2
-1
0
1 at 1842.104 kb on - strand, within RR42_RS08785 at 1842.234 kb on + strand at 1842.235 kb on - strand at 1842.235 kb on - strand at 1842.235 kb on - strand at 1842.300 kb on + strand at 1842.390 kb on - strand at 1842.433 kb on + strand, within RR42_RS08790 at 1842.762 kb on + strand at 1842.763 kb on - strand at 1842.763 kb on - strand at 1842.805 kb on + strand at 1842.805 kb on + strand at 1842.830 kb on - strand at 1842.954 kb on + strand, within RR42_RS08795 at 1843.059 kb on - strand, within RR42_RS08795 at 1843.136 kb on - strand, within RR42_RS08795 at 1843.136 kb on - strand, within RR42_RS08795 at 1843.311 kb on + strand, within RR42_RS08795 at 1843.769 kb on - strand, within RR42_RS08800 at 1844.250 kb on - strand at 1844.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 1,842,104 - RR42_RS08785 0.80 +0.3 1,842,234 + +0.9 1,842,235 - -0.4 1,842,235 - +0.1 1,842,235 - -0.7 1,842,300 + +0.4 1,842,390 - +0.9 1,842,433 + RR42_RS08790 0.18 +0.3 1,842,762 + +0.1 1,842,763 - +0.3 1,842,763 - +1.7 1,842,805 + -0.2 1,842,805 + +0.2 1,842,830 - -1.0 1,842,954 + RR42_RS08795 0.18 -1.1 1,843,059 - RR42_RS08795 0.36 -1.9 1,843,136 - RR42_RS08795 0.49 -0.5 1,843,136 - RR42_RS08795 0.49 -0.4 1,843,311 + RR42_RS08795 0.80 +1.3 1,843,769 - RR42_RS08800 0.27 +0.2 1,844,250 - -0.7 1,844,305 - -0.6
Or see this region's nucleotide sequence