Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07870

Experiment: R2A 37C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07860 and RR42_RS07865 are separated by 266 nucleotidesRR42_RS07865 and RR42_RS07870 are separated by 141 nucleotidesRR42_RS07870 and RR42_RS07875 are separated by 299 nucleotides RR42_RS07860: RR42_RS07860 - acetyltransferase, at 1,686,529 to 1,687,110 _RS07860 RR42_RS07865: RR42_RS07865 - carboxymuconolactone decarboxylase, at 1,687,377 to 1,687,898 _RS07865 RR42_RS07870: RR42_RS07870 - alkyl hydroperoxide reductase, at 1,688,040 to 1,688,588 _RS07870 RR42_RS07875: RR42_RS07875 - citrate-proton symporter, at 1,688,888 to 1,690,189 _RS07875 Position (kb) 1688 1689Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1687.089 kb on + strandat 1687.090 kb on - strandat 1687.090 kb on - strandat 1687.090 kb on - strandat 1687.090 kb on - strandat 1687.129 kb on + strandat 1687.130 kb on - strandat 1687.130 kb on - strandat 1687.147 kb on + strandat 1687.148 kb on - strandat 1687.148 kb on - strandat 1687.483 kb on + strand, within RR42_RS07865at 1687.537 kb on + strand, within RR42_RS07865at 1687.537 kb on + strand, within RR42_RS07865at 1687.537 kb on + strand, within RR42_RS07865at 1687.538 kb on - strand, within RR42_RS07865at 1687.579 kb on + strand, within RR42_RS07865at 1687.580 kb on - strand, within RR42_RS07865at 1687.580 kb on - strand, within RR42_RS07865at 1687.858 kb on + strandat 1688.041 kb on + strandat 1688.041 kb on + strandat 1688.042 kb on - strandat 1688.109 kb on - strand, within RR42_RS07870at 1688.196 kb on - strand, within RR42_RS07870at 1688.196 kb on - strand, within RR42_RS07870at 1688.449 kb on + strand, within RR42_RS07870at 1688.449 kb on + strand, within RR42_RS07870at 1688.449 kb on + strand, within RR42_RS07870at 1688.449 kb on + strand, within RR42_RS07870at 1688.450 kb on - strand, within RR42_RS07870at 1688.450 kb on - strand, within RR42_RS07870at 1688.450 kb on - strand, within RR42_RS07870at 1688.588 kb on + strandat 1688.588 kb on + strandat 1688.588 kb on + strandat 1688.711 kb on + strandat 1688.718 kb on + strandat 1688.861 kb on - strandat 1688.916 kb on + strandat 1688.916 kb on + strandat 1688.916 kb on + strandat 1688.916 kb on + strandat 1688.916 kb on + strandat 1688.916 kb on + strandat 1688.916 kb on + strandat 1688.916 kb on + strandat 1688.916 kb on + strandat 1688.916 kb on + strandat 1688.917 kb on - strandat 1688.917 kb on - strandat 1689.079 kb on + strand, within RR42_RS07875at 1689.081 kb on + strand, within RR42_RS07875at 1689.081 kb on + strand, within RR42_RS07875at 1689.081 kb on + strand, within RR42_RS07875at 1689.082 kb on - strand, within RR42_RS07875at 1689.082 kb on - strand, within RR42_RS07875at 1689.082 kb on - strand, within RR42_RS07875at 1689.082 kb on - strand, within RR42_RS07875at 1689.156 kb on + strand, within RR42_RS07875at 1689.156 kb on + strand, within RR42_RS07875at 1689.157 kb on - strand, within RR42_RS07875at 1689.157 kb on - strand, within RR42_RS07875at 1689.157 kb on - strand, within RR42_RS07875at 1689.157 kb on - strand, within RR42_RS07875at 1689.165 kb on + strand, within RR42_RS07875at 1689.420 kb on + strand, within RR42_RS07875at 1689.420 kb on + strand, within RR42_RS07875at 1689.420 kb on + strand, within RR42_RS07875at 1689.421 kb on - strand, within RR42_RS07875at 1689.421 kb on - strand, within RR42_RS07875at 1689.421 kb on - strand, within RR42_RS07875at 1689.435 kb on + strand, within RR42_RS07875at 1689.435 kb on + strand, within RR42_RS07875at 1689.435 kb on + strand, within RR42_RS07875at 1689.435 kb on + strand, within RR42_RS07875at 1689.435 kb on + strand, within RR42_RS07875at 1689.436 kb on - strand, within RR42_RS07875at 1689.436 kb on - strand, within RR42_RS07875at 1689.436 kb on - strand, within RR42_RS07875at 1689.436 kb on - strand, within RR42_RS07875at 1689.510 kb on + strand, within RR42_RS07875at 1689.510 kb on + strand, within RR42_RS07875at 1689.510 kb on + strand, within RR42_RS07875at 1689.511 kb on - strand, within RR42_RS07875

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A 37C
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1,687,089 + -0.6
1,687,090 - -1.4
1,687,090 - +0.5
1,687,090 - +1.0
1,687,090 - +0.1
1,687,129 + -1.6
1,687,130 - -0.0
1,687,130 - +0.1
1,687,147 + -0.3
1,687,148 - -0.9
1,687,148 - -0.3
1,687,483 + RR42_RS07865 0.20 +0.3
1,687,537 + RR42_RS07865 0.31 -0.6
1,687,537 + RR42_RS07865 0.31 -0.7
1,687,537 + RR42_RS07865 0.31 +0.3
1,687,538 - RR42_RS07865 0.31 -0.1
1,687,579 + RR42_RS07865 0.39 +0.4
1,687,580 - RR42_RS07865 0.39 +0.1
1,687,580 - RR42_RS07865 0.39 -1.5
1,687,858 + +2.6
1,688,041 + +0.0
1,688,041 + -0.6
1,688,042 - -0.8
1,688,109 - RR42_RS07870 0.13 -0.7
1,688,196 - RR42_RS07870 0.28 -2.4
1,688,196 - RR42_RS07870 0.28 +1.0
1,688,449 + RR42_RS07870 0.74 -0.2
1,688,449 + RR42_RS07870 0.74 -0.9
1,688,449 + RR42_RS07870 0.74 -0.4
1,688,449 + RR42_RS07870 0.74 -1.1
1,688,450 - RR42_RS07870 0.75 -1.7
1,688,450 - RR42_RS07870 0.75 -1.0
1,688,450 - RR42_RS07870 0.75 -2.9
1,688,588 + -0.9
1,688,588 + -1.4
1,688,588 + +0.4
1,688,711 + -0.8
1,688,718 + -0.4
1,688,861 - +0.1
1,688,916 + +0.5
1,688,916 + -0.4
1,688,916 + -0.5
1,688,916 + +0.4
1,688,916 + +0.3
1,688,916 + -0.1
1,688,916 + -0.6
1,688,916 + +0.8
1,688,916 + -0.2
1,688,916 + -0.8
1,688,917 - +0.3
1,688,917 - -0.1
1,689,079 + RR42_RS07875 0.15 +0.6
1,689,081 + RR42_RS07875 0.15 -0.5
1,689,081 + RR42_RS07875 0.15 -0.1
1,689,081 + RR42_RS07875 0.15 +0.1
1,689,082 - RR42_RS07875 0.15 -0.9
1,689,082 - RR42_RS07875 0.15 +1.6
1,689,082 - RR42_RS07875 0.15 +0.2
1,689,082 - RR42_RS07875 0.15 -0.1
1,689,156 + RR42_RS07875 0.21 -0.4
1,689,156 + RR42_RS07875 0.21 +0.1
1,689,157 - RR42_RS07875 0.21 -0.3
1,689,157 - RR42_RS07875 0.21 -0.9
1,689,157 - RR42_RS07875 0.21 -0.5
1,689,157 - RR42_RS07875 0.21 -0.9
1,689,165 + RR42_RS07875 0.21 +0.2
1,689,420 + RR42_RS07875 0.41 +0.4
1,689,420 + RR42_RS07875 0.41 +1.3
1,689,420 + RR42_RS07875 0.41 -0.4
1,689,421 - RR42_RS07875 0.41 -1.2
1,689,421 - RR42_RS07875 0.41 -0.0
1,689,421 - RR42_RS07875 0.41 +0.6
1,689,435 + RR42_RS07875 0.42 -2.2
1,689,435 + RR42_RS07875 0.42 -0.9
1,689,435 + RR42_RS07875 0.42 +0.1
1,689,435 + RR42_RS07875 0.42 -0.9
1,689,435 + RR42_RS07875 0.42 +0.6
1,689,436 - RR42_RS07875 0.42 -0.5
1,689,436 - RR42_RS07875 0.42 -0.3
1,689,436 - RR42_RS07875 0.42 -0.7
1,689,436 - RR42_RS07875 0.42 -0.3
1,689,510 + RR42_RS07875 0.48 -1.0
1,689,510 + RR42_RS07875 0.48 +0.3
1,689,510 + RR42_RS07875 0.48 -0.1
1,689,511 - RR42_RS07875 0.48 -0.8

Or see this region's nucleotide sequence