Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07860 and RR42_RS07865 are separated by 266 nucleotides RR42_RS07865 and RR42_RS07870 are separated by 141 nucleotides RR42_RS07870 and RR42_RS07875 are separated by 299 nucleotides
RR42_RS07860: RR42_RS07860 - acetyltransferase, at 1,686,529 to 1,687,110
_RS07860
RR42_RS07865: RR42_RS07865 - carboxymuconolactone decarboxylase, at 1,687,377 to 1,687,898
_RS07865
RR42_RS07870: RR42_RS07870 - alkyl hydroperoxide reductase, at 1,688,040 to 1,688,588
_RS07870
RR42_RS07875: RR42_RS07875 - citrate-proton symporter, at 1,688,888 to 1,690,189
_RS07875
Position (kb)
1688
1689 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1687.089 kb on + strand at 1687.090 kb on - strand at 1687.090 kb on - strand at 1687.090 kb on - strand at 1687.090 kb on - strand at 1687.129 kb on + strand at 1687.130 kb on - strand at 1687.130 kb on - strand at 1687.147 kb on + strand at 1687.148 kb on - strand at 1687.148 kb on - strand at 1687.483 kb on + strand, within RR42_RS07865 at 1687.537 kb on + strand, within RR42_RS07865 at 1687.537 kb on + strand, within RR42_RS07865 at 1687.537 kb on + strand, within RR42_RS07865 at 1687.538 kb on - strand, within RR42_RS07865 at 1687.579 kb on + strand, within RR42_RS07865 at 1687.580 kb on - strand, within RR42_RS07865 at 1687.580 kb on - strand, within RR42_RS07865 at 1687.858 kb on + strand at 1688.041 kb on + strand at 1688.041 kb on + strand at 1688.042 kb on - strand at 1688.109 kb on - strand, within RR42_RS07870 at 1688.196 kb on - strand, within RR42_RS07870 at 1688.196 kb on - strand, within RR42_RS07870 at 1688.449 kb on + strand, within RR42_RS07870 at 1688.449 kb on + strand, within RR42_RS07870 at 1688.449 kb on + strand, within RR42_RS07870 at 1688.449 kb on + strand, within RR42_RS07870 at 1688.450 kb on - strand, within RR42_RS07870 at 1688.450 kb on - strand, within RR42_RS07870 at 1688.450 kb on - strand, within RR42_RS07870 at 1688.588 kb on + strand at 1688.588 kb on + strand at 1688.588 kb on + strand at 1688.711 kb on + strand at 1688.718 kb on + strand at 1688.861 kb on - strand at 1688.916 kb on + strand at 1688.916 kb on + strand at 1688.916 kb on + strand at 1688.916 kb on + strand at 1688.916 kb on + strand at 1688.916 kb on + strand at 1688.916 kb on + strand at 1688.916 kb on + strand at 1688.916 kb on + strand at 1688.916 kb on + strand at 1688.917 kb on - strand at 1688.917 kb on - strand at 1689.079 kb on + strand, within RR42_RS07875 at 1689.081 kb on + strand, within RR42_RS07875 at 1689.081 kb on + strand, within RR42_RS07875 at 1689.081 kb on + strand, within RR42_RS07875 at 1689.082 kb on - strand, within RR42_RS07875 at 1689.082 kb on - strand, within RR42_RS07875 at 1689.082 kb on - strand, within RR42_RS07875 at 1689.082 kb on - strand, within RR42_RS07875 at 1689.156 kb on + strand, within RR42_RS07875 at 1689.156 kb on + strand, within RR42_RS07875 at 1689.157 kb on - strand, within RR42_RS07875 at 1689.157 kb on - strand, within RR42_RS07875 at 1689.157 kb on - strand, within RR42_RS07875 at 1689.157 kb on - strand, within RR42_RS07875 at 1689.165 kb on + strand, within RR42_RS07875 at 1689.420 kb on + strand, within RR42_RS07875 at 1689.420 kb on + strand, within RR42_RS07875 at 1689.420 kb on + strand, within RR42_RS07875 at 1689.421 kb on - strand, within RR42_RS07875 at 1689.421 kb on - strand, within RR42_RS07875 at 1689.421 kb on - strand, within RR42_RS07875 at 1689.435 kb on + strand, within RR42_RS07875 at 1689.435 kb on + strand, within RR42_RS07875 at 1689.435 kb on + strand, within RR42_RS07875 at 1689.435 kb on + strand, within RR42_RS07875 at 1689.435 kb on + strand, within RR42_RS07875 at 1689.436 kb on - strand, within RR42_RS07875 at 1689.436 kb on - strand, within RR42_RS07875 at 1689.436 kb on - strand, within RR42_RS07875 at 1689.436 kb on - strand, within RR42_RS07875 at 1689.510 kb on + strand, within RR42_RS07875 at 1689.510 kb on + strand, within RR42_RS07875 at 1689.510 kb on + strand, within RR42_RS07875 at 1689.511 kb on - strand, within RR42_RS07875
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 1,687,089 + -0.6 1,687,090 - -1.4 1,687,090 - +0.5 1,687,090 - +1.0 1,687,090 - +0.1 1,687,129 + -1.6 1,687,130 - -0.0 1,687,130 - +0.1 1,687,147 + -0.3 1,687,148 - -0.9 1,687,148 - -0.3 1,687,483 + RR42_RS07865 0.20 +0.3 1,687,537 + RR42_RS07865 0.31 -0.6 1,687,537 + RR42_RS07865 0.31 -0.7 1,687,537 + RR42_RS07865 0.31 +0.3 1,687,538 - RR42_RS07865 0.31 -0.1 1,687,579 + RR42_RS07865 0.39 +0.4 1,687,580 - RR42_RS07865 0.39 +0.1 1,687,580 - RR42_RS07865 0.39 -1.5 1,687,858 + +2.6 1,688,041 + +0.0 1,688,041 + -0.6 1,688,042 - -0.8 1,688,109 - RR42_RS07870 0.13 -0.7 1,688,196 - RR42_RS07870 0.28 -2.4 1,688,196 - RR42_RS07870 0.28 +1.0 1,688,449 + RR42_RS07870 0.74 -0.2 1,688,449 + RR42_RS07870 0.74 -0.9 1,688,449 + RR42_RS07870 0.74 -0.4 1,688,449 + RR42_RS07870 0.74 -1.1 1,688,450 - RR42_RS07870 0.75 -1.7 1,688,450 - RR42_RS07870 0.75 -1.0 1,688,450 - RR42_RS07870 0.75 -2.9 1,688,588 + -0.9 1,688,588 + -1.4 1,688,588 + +0.4 1,688,711 + -0.8 1,688,718 + -0.4 1,688,861 - +0.1 1,688,916 + +0.5 1,688,916 + -0.4 1,688,916 + -0.5 1,688,916 + +0.4 1,688,916 + +0.3 1,688,916 + -0.1 1,688,916 + -0.6 1,688,916 + +0.8 1,688,916 + -0.2 1,688,916 + -0.8 1,688,917 - +0.3 1,688,917 - -0.1 1,689,079 + RR42_RS07875 0.15 +0.6 1,689,081 + RR42_RS07875 0.15 -0.5 1,689,081 + RR42_RS07875 0.15 -0.1 1,689,081 + RR42_RS07875 0.15 +0.1 1,689,082 - RR42_RS07875 0.15 -0.9 1,689,082 - RR42_RS07875 0.15 +1.6 1,689,082 - RR42_RS07875 0.15 +0.2 1,689,082 - RR42_RS07875 0.15 -0.1 1,689,156 + RR42_RS07875 0.21 -0.4 1,689,156 + RR42_RS07875 0.21 +0.1 1,689,157 - RR42_RS07875 0.21 -0.3 1,689,157 - RR42_RS07875 0.21 -0.9 1,689,157 - RR42_RS07875 0.21 -0.5 1,689,157 - RR42_RS07875 0.21 -0.9 1,689,165 + RR42_RS07875 0.21 +0.2 1,689,420 + RR42_RS07875 0.41 +0.4 1,689,420 + RR42_RS07875 0.41 +1.3 1,689,420 + RR42_RS07875 0.41 -0.4 1,689,421 - RR42_RS07875 0.41 -1.2 1,689,421 - RR42_RS07875 0.41 -0.0 1,689,421 - RR42_RS07875 0.41 +0.6 1,689,435 + RR42_RS07875 0.42 -2.2 1,689,435 + RR42_RS07875 0.42 -0.9 1,689,435 + RR42_RS07875 0.42 +0.1 1,689,435 + RR42_RS07875 0.42 -0.9 1,689,435 + RR42_RS07875 0.42 +0.6 1,689,436 - RR42_RS07875 0.42 -0.5 1,689,436 - RR42_RS07875 0.42 -0.3 1,689,436 - RR42_RS07875 0.42 -0.7 1,689,436 - RR42_RS07875 0.42 -0.3 1,689,510 + RR42_RS07875 0.48 -1.0 1,689,510 + RR42_RS07875 0.48 +0.3 1,689,510 + RR42_RS07875 0.48 -0.1 1,689,511 - RR42_RS07875 0.48 -0.8
Or see this region's nucleotide sequence