Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03555 and RR42_RS03560 are separated by 501 nucleotides RR42_RS03560 and RR42_RS03565 are separated by 708 nucleotides
RR42_RS03555: RR42_RS03555 - hypothetical protein, at 791,278 to 792,225
_RS03555
RR42_RS03560: RR42_RS03560 - hypothetical protein, at 792,727 to 793,317
_RS03560
RR42_RS03565: RR42_RS03565 - hypothetical protein, at 794,026 to 794,631
_RS03565
Position (kb) 792
793
794 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 791.779 kb on + strand, within RR42_RS03555 at 791.780 kb on - strand, within RR42_RS03555 at 791.788 kb on - strand, within RR42_RS03555 at 791.970 kb on + strand, within RR42_RS03555 at 792.065 kb on - strand, within RR42_RS03555 at 792.276 kb on - strand at 792.276 kb on - strand at 792.276 kb on - strand at 792.294 kb on - strand at 792.294 kb on - strand at 792.294 kb on - strand at 792.294 kb on - strand at 792.383 kb on - strand at 792.492 kb on - strand at 792.553 kb on + strand at 792.771 kb on + strand at 792.814 kb on + strand, within RR42_RS03560 at 792.814 kb on + strand, within RR42_RS03560 at 792.814 kb on + strand, within RR42_RS03560 at 792.815 kb on - strand, within RR42_RS03560 at 792.818 kb on + strand, within RR42_RS03560 at 793.385 kb on + strand at 793.386 kb on - strand at 793.386 kb on - strand at 793.438 kb on - strand at 793.452 kb on + strand at 793.576 kb on + strand at 793.669 kb on + strand at 793.683 kb on + strand at 793.684 kb on - strand at 793.698 kb on + strand at 793.824 kb on + strand at 793.860 kb on + strand at 793.861 kb on - strand at 793.867 kb on + strand at 793.867 kb on + strand at 793.868 kb on - strand at 794.107 kb on - strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.186 kb on - strand, within RR42_RS03565 at 794.212 kb on - strand, within RR42_RS03565 at 794.232 kb on - strand, within RR42_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 791,779 + RR42_RS03555 0.53 -1.0 791,780 - RR42_RS03555 0.53 +0.2 791,788 - RR42_RS03555 0.54 +0.8 791,970 + RR42_RS03555 0.73 -2.2 792,065 - RR42_RS03555 0.83 +0.1 792,276 - -0.7 792,276 - +1.0 792,276 - -0.5 792,294 - +0.6 792,294 - -0.1 792,294 - +0.3 792,294 - -1.2 792,383 - +0.1 792,492 - +0.6 792,553 + -0.8 792,771 + -0.9 792,814 + RR42_RS03560 0.15 -1.6 792,814 + RR42_RS03560 0.15 -1.1 792,814 + RR42_RS03560 0.15 +2.4 792,815 - RR42_RS03560 0.15 +0.6 792,818 + RR42_RS03560 0.15 -3.4 793,385 + -1.5 793,386 - +1.0 793,386 - +1.8 793,438 - -0.4 793,452 + -1.1 793,576 + -1.0 793,669 + -2.0 793,683 + -3.1 793,684 - +0.1 793,698 + -0.3 793,824 + -0.4 793,860 + -0.4 793,861 - -0.2 793,867 + -1.5 793,867 + -3.2 793,868 - -0.7 794,107 - RR42_RS03565 0.13 -0.4 794,185 + RR42_RS03565 0.26 -0.7 794,185 + RR42_RS03565 0.26 -0.4 794,186 - RR42_RS03565 0.26 -0.2 794,212 - RR42_RS03565 0.31 +0.8 794,232 - RR42_RS03565 0.34 +0.0
Or see this region's nucleotide sequence