Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03125 and RR42_RS03130 are separated by 470 nucleotides RR42_RS03130 and RR42_RS03135 are separated by 13 nucleotides
RR42_RS03125: RR42_RS03125 - hypothetical protein, at 690,812 to 691,306
_RS03125
RR42_RS03130: RR42_RS03130 - hypothetical protein, at 691,777 to 692,166
_RS03130
RR42_RS03135: RR42_RS03135 - hypothetical protein, at 692,180 to 692,779
_RS03135
Position (kb) 692
693 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 691.379 kb on + strand at 691.430 kb on + strand at 691.481 kb on + strand at 691.498 kb on - strand at 691.778 kb on + strand at 691.778 kb on + strand at 691.778 kb on + strand at 691.868 kb on + strand, within RR42_RS03130 at 691.869 kb on - strand, within RR42_RS03130 at 692.102 kb on + strand, within RR42_RS03130 at 692.102 kb on + strand, within RR42_RS03130 at 692.103 kb on - strand, within RR42_RS03130 at 692.182 kb on - strand at 692.193 kb on + strand at 692.193 kb on + strand at 692.193 kb on + strand at 692.194 kb on - strand at 692.202 kb on + strand at 692.203 kb on - strand at 692.203 kb on - strand at 692.203 kb on - strand at 692.203 kb on - strand at 692.280 kb on + strand, within RR42_RS03135 at 692.305 kb on + strand, within RR42_RS03135 at 692.359 kb on + strand, within RR42_RS03135 at 692.360 kb on - strand, within RR42_RS03135 at 692.361 kb on + strand, within RR42_RS03135 at 692.361 kb on + strand, within RR42_RS03135 at 692.361 kb on + strand, within RR42_RS03135 at 692.361 kb on + strand, within RR42_RS03135 at 692.362 kb on - strand, within RR42_RS03135 at 692.362 kb on - strand, within RR42_RS03135 at 692.368 kb on - strand, within RR42_RS03135 at 692.505 kb on + strand, within RR42_RS03135 at 692.528 kb on + strand, within RR42_RS03135 at 692.528 kb on + strand, within RR42_RS03135 at 692.529 kb on - strand, within RR42_RS03135 at 692.533 kb on + strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.534 kb on - strand, within RR42_RS03135 at 692.537 kb on + strand, within RR42_RS03135 at 692.537 kb on + strand, within RR42_RS03135 at 692.537 kb on + strand, within RR42_RS03135 at 692.537 kb on + strand, within RR42_RS03135 at 692.538 kb on - strand, within RR42_RS03135 at 692.538 kb on - strand, within RR42_RS03135 at 692.549 kb on + strand, within RR42_RS03135 at 692.549 kb on + strand, within RR42_RS03135 at 692.767 kb on + strand at 692.767 kb on + strand at 692.767 kb on + strand at 692.767 kb on + strand at 692.768 kb on - strand at 692.794 kb on + strand at 692.795 kb on - strand at 692.846 kb on - strand at 692.846 kb on - strand at 692.960 kb on - strand at 692.994 kb on - strand at 693.084 kb on - strand at 693.101 kb on - strand at 693.135 kb on + strand at 693.204 kb on - strand at 693.204 kb on - strand at 693.204 kb on - strand at 693.286 kb on + strand at 693.286 kb on + strand at 693.286 kb on + strand at 693.287 kb on - strand at 693.287 kb on - strand at 693.287 kb on - strand at 693.289 kb on - strand at 693.366 kb on - strand at 693.378 kb on + strand at 693.390 kb on - strand at 693.397 kb on + strand at 693.397 kb on + strand at 693.412 kb on + strand at 693.412 kb on + strand at 693.413 kb on - strand at 693.465 kb on + strand at 693.466 kb on - strand at 693.466 kb on - strand at 693.529 kb on + strand at 693.529 kb on + strand at 693.529 kb on + strand at 693.530 kb on - strand at 693.530 kb on - strand at 693.530 kb on - strand at 693.530 kb on - strand at 693.531 kb on + strand at 693.531 kb on + strand at 693.531 kb on + strand at 693.531 kb on + strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.532 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.534 kb on - strand at 693.543 kb on + strand at 693.544 kb on - strand at 693.549 kb on + strand at 693.549 kb on + strand at 693.549 kb on + strand at 693.549 kb on + strand at 693.550 kb on - strand at 693.615 kb on - strand at 693.661 kb on - strand at 693.684 kb on + strand at 693.685 kb on - strand at 693.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 691,379 + +1.2 691,430 + -0.5 691,481 + +0.5 691,498 - -0.7 691,778 + -0.7 691,778 + +0.5 691,778 + -0.6 691,868 + RR42_RS03130 0.23 -0.6 691,869 - RR42_RS03130 0.24 -1.3 692,102 + RR42_RS03130 0.83 -1.0 692,102 + RR42_RS03130 0.83 -0.7 692,103 - RR42_RS03130 0.84 -1.5 692,182 - -0.5 692,193 + +0.1 692,193 + +0.0 692,193 + -2.0 692,194 - -0.3 692,202 + +1.0 692,203 - -0.4 692,203 - -0.0 692,203 - -0.3 692,203 - -0.0 692,280 + RR42_RS03135 0.17 -2.2 692,305 + RR42_RS03135 0.21 +1.2 692,359 + RR42_RS03135 0.30 +0.1 692,360 - RR42_RS03135 0.30 +0.4 692,361 + RR42_RS03135 0.30 +0.5 692,361 + RR42_RS03135 0.30 -0.1 692,361 + RR42_RS03135 0.30 +0.8 692,361 + RR42_RS03135 0.30 +1.0 692,362 - RR42_RS03135 0.30 -0.4 692,362 - RR42_RS03135 0.30 +0.0 692,368 - RR42_RS03135 0.31 -2.3 692,505 + RR42_RS03135 0.54 +0.5 692,528 + RR42_RS03135 0.58 -0.1 692,528 + RR42_RS03135 0.58 -2.2 692,529 - RR42_RS03135 0.58 -0.2 692,533 + RR42_RS03135 0.59 -0.3 692,534 - RR42_RS03135 0.59 -0.4 692,534 - RR42_RS03135 0.59 +0.3 692,534 - RR42_RS03135 0.59 -0.4 692,534 - RR42_RS03135 0.59 +0.9 692,534 - RR42_RS03135 0.59 +0.5 692,534 - RR42_RS03135 0.59 -0.2 692,534 - RR42_RS03135 0.59 +0.5 692,537 + RR42_RS03135 0.59 -0.2 692,537 + RR42_RS03135 0.59 +0.2 692,537 + RR42_RS03135 0.59 +0.2 692,537 + RR42_RS03135 0.59 +0.4 692,538 - RR42_RS03135 0.60 +0.6 692,538 - RR42_RS03135 0.60 +1.1 692,549 + RR42_RS03135 0.61 -0.6 692,549 + RR42_RS03135 0.61 +0.7 692,767 + -0.0 692,767 + -1.5 692,767 + -1.2 692,767 + -0.1 692,768 - +0.2 692,794 + -0.2 692,795 - +1.1 692,846 - +0.8 692,846 - +0.0 692,960 - -0.3 692,994 - +1.1 693,084 - +0.1 693,101 - +0.0 693,135 + +0.2 693,204 - +0.6 693,204 - +0.9 693,204 - -0.4 693,286 + +1.2 693,286 + -1.3 693,286 + +0.4 693,287 - +0.6 693,287 - -0.2 693,287 - -0.1 693,289 - +0.3 693,366 - +0.6 693,378 + -1.2 693,390 - +0.0 693,397 + +0.8 693,397 + -0.1 693,412 + -2.9 693,412 + -2.0 693,413 - +0.3 693,465 + +0.2 693,466 - -0.5 693,466 - -1.3 693,529 + -0.3 693,529 + -0.1 693,529 + -0.1 693,530 - -0.4 693,530 - -2.3 693,530 - +0.4 693,530 - +0.3 693,531 + -0.2 693,531 + +0.7 693,531 + -0.7 693,531 + -0.6 693,532 - +2.8 693,532 - -0.7 693,532 - -0.2 693,532 - -1.1 693,532 - -0.3 693,532 - -0.2 693,532 - -0.0 693,532 - -1.3 693,534 - +3.4 693,534 - -0.6 693,534 - +1.8 693,534 - -0.4 693,534 - -0.5 693,543 + -0.5 693,544 - -0.3 693,549 + +0.6 693,549 + +0.5 693,549 + -1.8 693,549 + -2.9 693,550 - -0.8 693,615 - +0.8 693,661 - -2.3 693,684 + -0.7 693,685 - -2.0 693,723 - +0.2
Or see this region's nucleotide sequence