Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02380

Experiment: R2A 37C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS02375 and RR42_RS02380 are separated by 158 nucleotidesRR42_RS02380 and RR42_RS02385 are separated by 70 nucleotidesRR42_RS02385 and RR42_RS02390 are separated by 170 nucleotides RR42_RS02375: RR42_RS02375 - membrane protein, at 532,816 to 533,394 _RS02375 RR42_RS02380: RR42_RS02380 - FAD-linked oxidase, at 533,553 to 537,527 _RS02380 RR42_RS02385: RR42_RS02385 - hydrolase, at 537,598 to 538,032 _RS02385 RR42_RS02390: RR42_RS02390 - ABC transporter ATP-binding protein, at 538,203 to 540,086 _RS02390 Position (kb) 533 534 535 536 537 538Strain fitness (log2 ratio) -3 -2 -1 0 1at 532.554 kb on - strandat 532.626 kb on + strandat 532.627 kb on - strandat 532.627 kb on - strandat 532.627 kb on - strandat 532.731 kb on - strandat 532.731 kb on - strandat 532.813 kb on + strandat 532.813 kb on + strandat 532.813 kb on + strandat 532.814 kb on - strandat 532.815 kb on + strandat 532.815 kb on + strandat 532.815 kb on + strandat 532.819 kb on - strandat 532.946 kb on - strand, within RR42_RS02375at 532.947 kb on + strand, within RR42_RS02375at 532.948 kb on - strand, within RR42_RS02375at 532.948 kb on - strand, within RR42_RS02375at 532.948 kb on - strand, within RR42_RS02375at 533.161 kb on + strand, within RR42_RS02375at 533.162 kb on - strand, within RR42_RS02375at 533.284 kb on + strand, within RR42_RS02375at 533.284 kb on + strand, within RR42_RS02375at 533.284 kb on + strand, within RR42_RS02375at 533.285 kb on - strand, within RR42_RS02375at 533.285 kb on - strand, within RR42_RS02375at 533.285 kb on - strand, within RR42_RS02375at 533.312 kb on - strand, within RR42_RS02375at 533.312 kb on - strand, within RR42_RS02375at 533.392 kb on + strandat 533.392 kb on + strandat 533.392 kb on + strandat 533.392 kb on + strandat 533.392 kb on + strandat 533.487 kb on - strandat 533.487 kb on - strandat 533.626 kb on - strandat 533.745 kb on + strandat 534.001 kb on - strand, within RR42_RS02380at 534.120 kb on + strand, within RR42_RS02380at 534.229 kb on - strand, within RR42_RS02380at 535.258 kb on - strand, within RR42_RS02380at 535.380 kb on - strand, within RR42_RS02380at 536.026 kb on - strand, within RR42_RS02380at 536.027 kb on + strand, within RR42_RS02380at 536.176 kb on - strand, within RR42_RS02380at 536.524 kb on + strand, within RR42_RS02380at 536.740 kb on - strand, within RR42_RS02380at 536.813 kb on - strand, within RR42_RS02380at 536.813 kb on - strand, within RR42_RS02380at 536.841 kb on + strand, within RR42_RS02380at 536.950 kb on - strand, within RR42_RS02380at 536.950 kb on - strand, within RR42_RS02380at 536.992 kb on - strand, within RR42_RS02380at 536.992 kb on - strand, within RR42_RS02380at 537.061 kb on - strand, within RR42_RS02380at 537.108 kb on + strand, within RR42_RS02380at 537.109 kb on - strand, within RR42_RS02380at 537.114 kb on + strand, within RR42_RS02380at 537.114 kb on + strand, within RR42_RS02380at 537.115 kb on - strand, within RR42_RS02380at 537.115 kb on - strand, within RR42_RS02380at 537.115 kb on - strand, within RR42_RS02380at 537.115 kb on - strand, within RR42_RS02380at 537.396 kb on + strandat 537.859 kb on - strand, within RR42_RS02385at 537.882 kb on + strand, within RR42_RS02385at 537.883 kb on - strand, within RR42_RS02385at 538.130 kb on - strandat 538.130 kb on - strandat 538.311 kb on + strandat 538.311 kb on + strandat 538.312 kb on - strandat 538.386 kb on + strandat 538.387 kb on - strandat 538.387 kb on - strandat 538.388 kb on + strandat 538.388 kb on + strandat 538.389 kb on - strandat 538.389 kb on - strandat 538.389 kb on - strandat 538.426 kb on - strand, within RR42_RS02390at 538.449 kb on + strand, within RR42_RS02390at 538.449 kb on + strand, within RR42_RS02390at 538.450 kb on - strand, within RR42_RS02390at 538.450 kb on - strand, within RR42_RS02390at 538.502 kb on + strand, within RR42_RS02390at 538.503 kb on - strand, within RR42_RS02390at 538.516 kb on + strand, within RR42_RS02390at 538.517 kb on - strand, within RR42_RS02390at 538.517 kb on - strand, within RR42_RS02390at 538.517 kb on - strand, within RR42_RS02390at 538.527 kb on + strand, within RR42_RS02390at 538.527 kb on + strand, within RR42_RS02390

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A 37C
remove
532,554 - +0.4
532,626 + +0.4
532,627 - -0.6
532,627 - +0.4
532,627 - +0.4
532,731 - +0.6
532,731 - +0.1
532,813 + +0.9
532,813 + +0.2
532,813 + -0.4
532,814 - +0.3
532,815 + -0.3
532,815 + +0.3
532,815 + -0.3
532,819 - +0.1
532,946 - RR42_RS02375 0.22 +1.0
532,947 + RR42_RS02375 0.23 -0.1
532,948 - RR42_RS02375 0.23 +1.1
532,948 - RR42_RS02375 0.23 +0.8
532,948 - RR42_RS02375 0.23 +0.3
533,161 + RR42_RS02375 0.60 -0.1
533,162 - RR42_RS02375 0.60 +0.0
533,284 + RR42_RS02375 0.81 +0.4
533,284 + RR42_RS02375 0.81 +0.2
533,284 + RR42_RS02375 0.81 -0.2
533,285 - RR42_RS02375 0.81 -0.3
533,285 - RR42_RS02375 0.81 +0.8
533,285 - RR42_RS02375 0.81 -0.3
533,312 - RR42_RS02375 0.86 +0.6
533,312 - RR42_RS02375 0.86 +0.6
533,392 + -0.1
533,392 + +0.3
533,392 + +0.2
533,392 + -0.1
533,392 + +0.4
533,487 - -2.4
533,487 - +1.4
533,626 - -1.1
533,745 + -2.0
534,001 - RR42_RS02380 0.11 -1.7
534,120 + RR42_RS02380 0.14 -3.6
534,229 - RR42_RS02380 0.17 -1.7
535,258 - RR42_RS02380 0.43 -1.4
535,380 - RR42_RS02380 0.46 -0.4
536,026 - RR42_RS02380 0.62 -0.1
536,027 + RR42_RS02380 0.62 -1.9
536,176 - RR42_RS02380 0.66 -3.0
536,524 + RR42_RS02380 0.75 -2.3
536,740 - RR42_RS02380 0.80 -1.7
536,813 - RR42_RS02380 0.82 -0.5
536,813 - RR42_RS02380 0.82 +0.6
536,841 + RR42_RS02380 0.83 -2.4
536,950 - RR42_RS02380 0.85 -1.7
536,950 - RR42_RS02380 0.85 -1.1
536,992 - RR42_RS02380 0.87 -0.7
536,992 - RR42_RS02380 0.87 -0.4
537,061 - RR42_RS02380 0.88 +0.4
537,108 + RR42_RS02380 0.89 -0.7
537,109 - RR42_RS02380 0.89 -0.6
537,114 + RR42_RS02380 0.90 -1.8
537,114 + RR42_RS02380 0.90 -1.9
537,115 - RR42_RS02380 0.90 +0.4
537,115 - RR42_RS02380 0.90 -0.7
537,115 - RR42_RS02380 0.90 -3.2
537,115 - RR42_RS02380 0.90 -2.3
537,396 + -2.4
537,859 - RR42_RS02385 0.60 +0.3
537,882 + RR42_RS02385 0.65 -0.2
537,883 - RR42_RS02385 0.66 -0.9
538,130 - -0.6
538,130 - +0.3
538,311 + -0.8
538,311 + -0.8
538,312 - -0.4
538,386 + +0.1
538,387 - -0.7
538,387 - -0.5
538,388 + -0.6
538,388 + -0.3
538,389 - -0.0
538,389 - +0.9
538,389 - +0.6
538,426 - RR42_RS02390 0.12 +1.0
538,449 + RR42_RS02390 0.13 +0.3
538,449 + RR42_RS02390 0.13 +1.1
538,450 - RR42_RS02390 0.13 +1.0
538,450 - RR42_RS02390 0.13 +1.2
538,502 + RR42_RS02390 0.16 -0.0
538,503 - RR42_RS02390 0.16 -2.6
538,516 + RR42_RS02390 0.17 +0.7
538,517 - RR42_RS02390 0.17 -0.3
538,517 - RR42_RS02390 0.17 +0.5
538,517 - RR42_RS02390 0.17 +1.1
538,527 + RR42_RS02390 0.17 -0.3
538,527 + RR42_RS02390 0.17 +0.3

Or see this region's nucleotide sequence