Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02240 and RR42_RS02245 are separated by 42 nucleotides RR42_RS02245 and RR42_RS02250 are separated by 159 nucleotides RR42_RS02250 and RR42_RS02255 are separated by 169 nucleotides
RR42_RS02240: RR42_RS02240 - D-galactarate dehydratase, at 495,768 to 496,943
_RS02240
RR42_RS02245: RR42_RS02245 - flagellar protein FlgA, at 496,986 to 497,267
_RS02245
RR42_RS02250: RR42_RS02250 - GntR family transcriptional regulator, at 497,427 to 498,179
_RS02250
RR42_RS02255: RR42_RS02255 - acid phosphatase, at 498,349 to 500,487
_RS02255
Position (kb) 497
498
499 Strain fitness (log2 ratio) -2
-1
0
1 at 496.467 kb on - strand, within RR42_RS02240 at 496.541 kb on - strand, within RR42_RS02240 at 497.256 kb on + strand at 497.438 kb on - strand at 497.469 kb on + strand at 497.470 kb on - strand at 497.537 kb on - strand, within RR42_RS02250 at 497.941 kb on - strand, within RR42_RS02250 at 497.941 kb on - strand, within RR42_RS02250 at 497.941 kb on - strand, within RR42_RS02250 at 498.207 kb on + strand at 498.207 kb on + strand at 498.307 kb on + strand at 498.504 kb on - strand at 498.537 kb on - strand at 498.612 kb on - strand, within RR42_RS02255 at 498.612 kb on - strand, within RR42_RS02255 at 498.632 kb on + strand, within RR42_RS02255 at 498.633 kb on - strand, within RR42_RS02255 at 498.699 kb on + strand, within RR42_RS02255 at 498.764 kb on + strand, within RR42_RS02255 at 498.764 kb on + strand, within RR42_RS02255 at 498.765 kb on - strand, within RR42_RS02255 at 498.765 kb on - strand, within RR42_RS02255 at 498.765 kb on - strand, within RR42_RS02255 at 498.765 kb on - strand, within RR42_RS02255 at 498.882 kb on - strand, within RR42_RS02255 at 498.882 kb on - strand, within RR42_RS02255 at 498.929 kb on + strand, within RR42_RS02255 at 498.930 kb on - strand, within RR42_RS02255 at 498.930 kb on - strand, within RR42_RS02255 at 499.142 kb on + strand, within RR42_RS02255 at 499.143 kb on - strand, within RR42_RS02255 at 499.143 kb on - strand, within RR42_RS02255
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 496,467 - RR42_RS02240 0.59 -0.0 496,541 - RR42_RS02240 0.66 -0.8 497,256 + +0.6 497,438 - +0.1 497,469 + -0.9 497,470 - +1.0 497,537 - RR42_RS02250 0.15 -0.0 497,941 - RR42_RS02250 0.68 -1.2 497,941 - RR42_RS02250 0.68 -1.5 497,941 - RR42_RS02250 0.68 -0.1 498,207 + -0.5 498,207 + +0.9 498,307 + +0.7 498,504 - -0.3 498,537 - -1.3 498,612 - RR42_RS02255 0.12 -1.4 498,612 - RR42_RS02255 0.12 +0.3 498,632 + RR42_RS02255 0.13 +0.9 498,633 - RR42_RS02255 0.13 +1.1 498,699 + RR42_RS02255 0.16 -0.8 498,764 + RR42_RS02255 0.19 -0.3 498,764 + RR42_RS02255 0.19 -0.1 498,765 - RR42_RS02255 0.19 +0.2 498,765 - RR42_RS02255 0.19 +0.7 498,765 - RR42_RS02255 0.19 -0.5 498,765 - RR42_RS02255 0.19 -1.2 498,882 - RR42_RS02255 0.25 -0.2 498,882 - RR42_RS02255 0.25 -2.1 498,929 + RR42_RS02255 0.27 -0.4 498,930 - RR42_RS02255 0.27 -0.8 498,930 - RR42_RS02255 0.27 +0.1 499,142 + RR42_RS02255 0.37 -0.0 499,143 - RR42_RS02255 0.37 -0.1 499,143 - RR42_RS02255 0.37 +1.3
Or see this region's nucleotide sequence