Experiment: R2A 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01410 and RR42_RS01415 are separated by 200 nucleotides RR42_RS01415 and RR42_RS01420 are separated by 8 nucleotides
RR42_RS01410: RR42_RS01410 - NAD-dependent dehydratase, at 318,260 to 319,285
_RS01410
RR42_RS01415: RR42_RS01415 - glutathione S-transferase, at 319,486 to 320,175
_RS01415
RR42_RS01420: RR42_RS01420 - 2', 3'-cyclic nucleotide 2'-phosphodiesterase, at 320,184 to 321,419
_RS01420
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 318.714 kb on - strand, within RR42_RS01410 at 318.714 kb on - strand, within RR42_RS01410 at 318.893 kb on + strand, within RR42_RS01410 at 318.893 kb on + strand, within RR42_RS01410 at 318.893 kb on + strand, within RR42_RS01410 at 318.894 kb on - strand, within RR42_RS01410 at 318.894 kb on - strand, within RR42_RS01410 at 318.959 kb on + strand, within RR42_RS01410 at 318.983 kb on + strand, within RR42_RS01410 at 318.984 kb on - strand, within RR42_RS01410 at 318.984 kb on - strand, within RR42_RS01410 at 318.985 kb on + strand, within RR42_RS01410 at 318.985 kb on + strand, within RR42_RS01410 at 318.985 kb on + strand, within RR42_RS01410 at 318.985 kb on + strand, within RR42_RS01410 at 318.986 kb on - strand, within RR42_RS01410 at 318.986 kb on - strand, within RR42_RS01410 at 318.986 kb on - strand, within RR42_RS01410 at 319.351 kb on - strand at 319.351 kb on - strand at 319.382 kb on + strand at 319.382 kb on + strand at 319.383 kb on - strand at 319.513 kb on + strand at 319.513 kb on + strand at 319.513 kb on + strand at 319.643 kb on + strand, within RR42_RS01415 at 319.643 kb on + strand, within RR42_RS01415 at 319.644 kb on - strand, within RR42_RS01415 at 319.699 kb on + strand, within RR42_RS01415 at 320.005 kb on + strand, within RR42_RS01415 at 320.005 kb on + strand, within RR42_RS01415 at 320.005 kb on + strand, within RR42_RS01415 at 320.005 kb on + strand, within RR42_RS01415 at 320.006 kb on - strand, within RR42_RS01415 at 320.038 kb on + strand, within RR42_RS01415 at 320.193 kb on + strand at 320.193 kb on + strand at 320.859 kb on + strand, within RR42_RS01420 at 321.005 kb on + strand, within RR42_RS01420
Per-strain Table
Position Strand Gene LocusTag Fraction R2A 37C remove 318,714 - RR42_RS01410 0.44 +0.2 318,714 - RR42_RS01410 0.44 -1.0 318,893 + RR42_RS01410 0.62 -1.4 318,893 + RR42_RS01410 0.62 -0.6 318,893 + RR42_RS01410 0.62 +0.7 318,894 - RR42_RS01410 0.62 +0.1 318,894 - RR42_RS01410 0.62 +0.1 318,959 + RR42_RS01410 0.68 -0.0 318,983 + RR42_RS01410 0.70 +0.2 318,984 - RR42_RS01410 0.71 -0.1 318,984 - RR42_RS01410 0.71 -0.1 318,985 + RR42_RS01410 0.71 +0.5 318,985 + RR42_RS01410 0.71 +0.0 318,985 + RR42_RS01410 0.71 +0.0 318,985 + RR42_RS01410 0.71 +0.5 318,986 - RR42_RS01410 0.71 +0.7 318,986 - RR42_RS01410 0.71 -0.1 318,986 - RR42_RS01410 0.71 -0.2 319,351 - -0.2 319,351 - +0.6 319,382 + -1.9 319,382 + -1.6 319,383 - -1.2 319,513 + +1.9 319,513 + +0.6 319,513 + +0.4 319,643 + RR42_RS01415 0.23 +0.2 319,643 + RR42_RS01415 0.23 -2.0 319,644 - RR42_RS01415 0.23 +0.3 319,699 + RR42_RS01415 0.31 -1.2 320,005 + RR42_RS01415 0.75 -1.0 320,005 + RR42_RS01415 0.75 -0.3 320,005 + RR42_RS01415 0.75 -0.3 320,005 + RR42_RS01415 0.75 -2.6 320,006 - RR42_RS01415 0.75 -2.1 320,038 + RR42_RS01415 0.80 +0.1 320,193 + +0.4 320,193 + -0.1 320,859 + RR42_RS01420 0.55 -0.3 321,005 + RR42_RS01420 0.66 -1.8
Or see this region's nucleotide sequence