Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS19330

Experiment: M63_quarter_strength

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS19325 and RALBFv3_RS19330 are separated by 9 nucleotidesRALBFv3_RS19330 and RALBFv3_RS19335 are separated by 69 nucleotides RALBFv3_RS19325: RALBFv3_RS19325 - acetate/propionate family kinase, at 930,470 to 931,648 _RS19325 RALBFv3_RS19330: RALBFv3_RS19330 - phosphate acetyltransferase, at 931,658 to 932,599 _RS19330 RALBFv3_RS19335: RALBFv3_RS19335 - DUF3141 domain-containing protein, at 932,669 to 934,900 _RS19335 Position (kb) 931 932 933Strain fitness (log2 ratio) -1 0 1at 930.680 kb on + strand, within RALBFv3_RS19325at 930.787 kb on + strand, within RALBFv3_RS19325at 930.846 kb on + strand, within RALBFv3_RS19325at 930.846 kb on + strand, within RALBFv3_RS19325at 930.847 kb on - strand, within RALBFv3_RS19325at 930.934 kb on + strand, within RALBFv3_RS19325at 930.961 kb on + strand, within RALBFv3_RS19325at 931.092 kb on + strand, within RALBFv3_RS19325at 931.334 kb on - strand, within RALBFv3_RS19325at 931.483 kb on + strand, within RALBFv3_RS19325at 931.520 kb on - strand, within RALBFv3_RS19325at 931.536 kb on + strandat 931.537 kb on - strandat 933.018 kb on + strand, within RALBFv3_RS19335at 933.019 kb on - strand, within RALBFv3_RS19335at 933.019 kb on - strand, within RALBFv3_RS19335at 933.406 kb on - strand, within RALBFv3_RS19335at 933.496 kb on - strand, within RALBFv3_RS19335at 933.522 kb on + strand, within RALBFv3_RS19335

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Per-strain Table

Position Strand Gene LocusTag Fraction M63_quarter_strength
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930,680 + RALBFv3_RS19325 0.18 +0.9
930,787 + RALBFv3_RS19325 0.27 -0.2
930,846 + RALBFv3_RS19325 0.32 -0.8
930,846 + RALBFv3_RS19325 0.32 -0.2
930,847 - RALBFv3_RS19325 0.32 +0.1
930,934 + RALBFv3_RS19325 0.39 +0.1
930,961 + RALBFv3_RS19325 0.42 +1.3
931,092 + RALBFv3_RS19325 0.53 +1.0
931,334 - RALBFv3_RS19325 0.73 -0.7
931,483 + RALBFv3_RS19325 0.86 -1.4
931,520 - RALBFv3_RS19325 0.89 +0.8
931,536 + -0.1
931,537 - -1.6
933,018 + RALBFv3_RS19335 0.16 +1.1
933,019 - RALBFv3_RS19335 0.16 +0.5
933,019 - RALBFv3_RS19335 0.16 +0.2
933,406 - RALBFv3_RS19335 0.33 -0.8
933,496 - RALBFv3_RS19335 0.37 -1.0
933,522 + RALBFv3_RS19335 0.38 +0.8

Or see this region's nucleotide sequence