Experiment: M63_quarter_strength
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18085 and RALBFv3_RS18090 are separated by 36 nucleotides RALBFv3_RS18090 and RALBFv3_RS18095 are separated by 324 nucleotides
RALBFv3_RS18085: RALBFv3_RS18085 - cytochrome d ubiquinol oxidase subunit II, at 579,724 to 580,734
_RS18085
RALBFv3_RS18090: RALBFv3_RS18090 - flagellar brake protein, at 580,771 to 581,679
_RS18090
RALBFv3_RS18095: RALBFv3_RS18095 - hypothetical protein, at 582,004 to 582,471
_RS18095
Position (kb) 580
581
582 Strain fitness (log2 ratio) -2
-1
0
1
2 at 579.781 kb on + strand at 579.781 kb on + strand at 579.781 kb on + strand at 579.782 kb on - strand at 579.782 kb on - strand at 579.782 kb on - strand at 579.782 kb on - strand at 579.782 kb on - strand at 579.973 kb on + strand, within RALBFv3_RS18085 at 579.973 kb on + strand, within RALBFv3_RS18085 at 579.974 kb on - strand, within RALBFv3_RS18085 at 579.974 kb on - strand, within RALBFv3_RS18085 at 580.078 kb on + strand, within RALBFv3_RS18085 at 580.232 kb on - strand, within RALBFv3_RS18085 at 580.684 kb on + strand at 580.685 kb on - strand at 580.685 kb on - strand at 580.809 kb on - strand at 581.046 kb on + strand, within RALBFv3_RS18090 at 581.047 kb on - strand, within RALBFv3_RS18090 at 581.165 kb on + strand, within RALBFv3_RS18090 at 581.165 kb on + strand, within RALBFv3_RS18090 at 581.717 kb on + strand at 581.718 kb on - strand at 581.719 kb on + strand at 581.719 kb on + strand at 581.719 kb on + strand at 581.720 kb on - strand at 581.720 kb on - strand at 581.720 kb on - strand at 581.720 kb on - strand at 581.736 kb on + strand at 581.736 kb on + strand at 581.736 kb on + strand at 581.737 kb on - strand at 581.875 kb on - strand at 582.048 kb on + strand at 582.048 kb on + strand at 582.048 kb on + strand at 582.048 kb on + strand at 582.048 kb on + strand at 582.049 kb on - strand at 582.049 kb on - strand at 582.049 kb on - strand at 582.297 kb on - strand, within RALBFv3_RS18095 at 582.428 kb on + strand at 582.580 kb on + strand at 582.581 kb on - strand at 582.581 kb on - strand at 582.629 kb on + strand at 582.629 kb on + strand at 582.629 kb on + strand at 582.629 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M63_quarter_strength remove 579,781 + +0.2 579,781 + -0.4 579,781 + -0.0 579,782 - +0.4 579,782 - -0.7 579,782 - -0.5 579,782 - -0.1 579,782 - +1.1 579,973 + RALBFv3_RS18085 0.25 -0.2 579,973 + RALBFv3_RS18085 0.25 -0.1 579,974 - RALBFv3_RS18085 0.25 -0.9 579,974 - RALBFv3_RS18085 0.25 +0.5 580,078 + RALBFv3_RS18085 0.35 -1.1 580,232 - RALBFv3_RS18085 0.50 +0.3 580,684 + -0.0 580,685 - +0.1 580,685 - -0.0 580,809 - -0.1 581,046 + RALBFv3_RS18090 0.30 -1.2 581,047 - RALBFv3_RS18090 0.30 -0.5 581,165 + RALBFv3_RS18090 0.43 +0.3 581,165 + RALBFv3_RS18090 0.43 -0.2 581,717 + +0.5 581,718 - +0.8 581,719 + +0.6 581,719 + +0.9 581,719 + -0.6 581,720 - +0.5 581,720 - +1.8 581,720 - -0.9 581,720 - +0.5 581,736 + +1.1 581,736 + -1.6 581,736 + -0.3 581,737 - -0.2 581,875 - -1.7 582,048 + +0.6 582,048 + +0.0 582,048 + -0.1 582,048 + -1.9 582,048 + -0.5 582,049 - -1.3 582,049 - -0.2 582,049 - +0.0 582,297 - RALBFv3_RS18095 0.63 -0.5 582,428 + -0.3 582,580 + +0.4 582,581 - -0.2 582,581 - -0.1 582,629 + +0.1 582,629 + -1.1 582,629 + +1.1 582,629 + -1.0
Or see this region's nucleotide sequence