Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4950

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
5,866,666	+		Psyr_4949	0.60	-0.2
5,866,666	+		Psyr_4949	0.60	+0.3
5,866,666	+		Psyr_4949	0.60	-0.0
5,866,667	-		Psyr_4949	0.60	+0.5
5,866,667	-		Psyr_4949	0.60	+1.6
5,866,667	-		Psyr_4949	0.60	+1.0
5,866,667	-		Psyr_4949	0.60	-0.1
5,866,723	+		Psyr_4949	0.67	-1.4
5,866,723	+		Psyr_4949	0.67	+0.8
5,866,724	-		Psyr_4949	0.67	+0.7
5,866,724	-		Psyr_4949	0.67	+3.2
5,866,724	-		Psyr_4949	0.67	-0.6
5,866,793	-		Psyr_4949	0.75	+1.5
5,867,095	+				-0.3
5,867,095	+				-1.2
5,867,095	+				+0.6
5,867,095	+				-0.6
5,867,095	+				+0.4
5,867,095	+				-2.7
5,867,095	+				+2.1
5,867,095	+				+0.3
5,867,095	+				+0.5
5,867,095	+				+2.1
5,867,095	+				+1.5
5,867,096	-				+0.6
5,867,096	-				+0.1
5,867,096	-				+0.8
5,867,096	-				-2.7
5,867,096	-				+0.0
5,867,096	-				+1.6
5,867,096	-				+0.7
5,867,096	-				-0.0
5,867,096	-				+0.2
5,867,096	-				+1.2
5,867,096	-				-2.5
5,867,096	-				+2.2
5,867,096	-				-0.5
5,867,096	-				+0.3
5,867,096	-				-0.9
5,867,096	-				-0.2
5,867,096	-				-0.3
5,867,257	+				-0.7
5,867,258	-				+1.5
5,867,282	+				+0.3
5,867,282	+				-2.3
5,867,386	+				+0.2
5,867,386	+				+2.1
5,867,387	-				+1.2
5,867,387	-				-1.5
5,867,387	-				+0.6
5,867,387	-				-0.1
5,867,401	-				-1.3
5,867,424	-				+1.2
5,867,448	+				-1.9
5,867,449	-				-0.5
5,867,451	+				+1.2
5,867,451	+				+0.7
5,867,452	-				+1.6
5,867,452	-				-2.6
5,867,613	+				+0.0
5,867,614	-				-0.9
5,867,614	-				+2.6
5,867,614	-				-1.9
5,867,614	-				+3.3
5,867,614	-				+1.3
5,867,687	+				+0.2
5,867,688	-				-0.3
5,867,688	-				+1.0
5,867,688	-				+0.1
5,867,688	-				+2.2
5,868,054	+		Psyr_4950	0.20	+0.3
5,868,054	+		Psyr_4950	0.20	-0.3
5,868,054	+		Psyr_4950	0.20	+2.0
5,868,054	+		Psyr_4950	0.20	+0.3
5,868,054	+		Psyr_4950	0.20	-1.7
5,868,054	+		Psyr_4950	0.20	-0.6
5,868,054	+		Psyr_4950	0.20	+0.2
5,868,055	-		Psyr_4950	0.20	+1.1
5,868,055	-		Psyr_4950	0.20	-0.4
5,868,055	-		Psyr_4950	0.20	+0.2
5,868,110	+		Psyr_4950	0.22	-0.5
5,868,110	+		Psyr_4950	0.22	+0.1
5,868,110	+		Psyr_4950	0.22	+1.0
5,868,110	+		Psyr_4950	0.22	+0.3
5,868,110	+		Psyr_4950	0.22	-0.2
5,868,110	+		Psyr_4950	0.22	+0.4
5,868,110	+		Psyr_4950	0.22	+0.6
5,868,111	-		Psyr_4950	0.22	-2.4
5,868,111	-		Psyr_4950	0.22	-2.6
5,868,111	-		Psyr_4950	0.22	+0.6
5,868,111	-		Psyr_4950	0.22	+0.2
5,868,111	-		Psyr_4950	0.22	+1.1
5,868,111	-		Psyr_4950	0.22	+0.6
5,868,114	+		Psyr_4950	0.22	-1.2
5,868,114	+		Psyr_4950	0.22	+1.3
5,868,114	+		Psyr_4950	0.22	+0.6
5,868,114	+		Psyr_4950	0.22	-2.4
5,868,115	-		Psyr_4950	0.23	-1.4
5,868,142	+		Psyr_4950	0.24	-0.8
5,868,142	+		Psyr_4950	0.24	-0.3
5,868,142	+		Psyr_4950	0.24	-1.1
5,868,142	+		Psyr_4950	0.24	-0.8
5,868,142	+		Psyr_4950	0.24	-0.7
5,868,142	+		Psyr_4950	0.24	-0.6
5,868,143	-		Psyr_4950	0.24	+0.5
5,868,143	-		Psyr_4950	0.24	+0.8
5,868,143	-		Psyr_4950	0.24	+0.9
5,868,143	-		Psyr_4950	0.24	+0.5
5,868,149	-		Psyr_4950	0.24	+0.9
5,868,276	+		Psyr_4950	0.30	+0.7
5,868,276	+		Psyr_4950	0.30	-0.3
5,868,277	-		Psyr_4950	0.30	+0.8
5,868,311	+		Psyr_4950	0.32	-3.3
5,868,311	+		Psyr_4950	0.32	+0.0
5,868,311	+		Psyr_4950	0.32	+0.6
5,868,312	-		Psyr_4950	0.32	-0.6
5,868,312	-		Psyr_4950	0.32	+1.0
5,868,312	-		Psyr_4950	0.32	+1.2
5,868,403	-		Psyr_4950	0.36	+0.1
5,868,572	+		Psyr_4950	0.44	-1.6
5,868,572	+		Psyr_4950	0.44	-2.9
5,868,572	+		Psyr_4950	0.44	-1.2
5,868,572	+		Psyr_4950	0.44	-0.3
5,868,573	-		Psyr_4950	0.44	-0.3
5,868,573	-		Psyr_4950	0.44	-1.1
5,868,573	-		Psyr_4950	0.44	-1.9
5,868,728	+		Psyr_4950	0.51	+0.6
5,868,728	+		Psyr_4950	0.51	-2.0
5,868,728	+		Psyr_4950	0.51	-1.7
5,868,729	-		Psyr_4950	0.51	-0.1
5,868,830	+		Psyr_4950	0.55	-0.1
5,868,831	-		Psyr_4950	0.55	-0.7
5,868,831	-		Psyr_4950	0.55	-0.7
5,868,854	+		Psyr_4950	0.57	+1.0
5,868,854	+		Psyr_4950	0.57	+0.2
5,868,855	-		Psyr_4950	0.57	-2.7
5,868,936	-		Psyr_4950	0.60	+0.3
5,868,936	-		Psyr_4950	0.60	-0.6
5,869,013	+		Psyr_4950	0.64	+0.4
5,869,013	+		Psyr_4950	0.64	-0.7
5,869,013	+		Psyr_4950	0.64	+0.5
5,869,013	+		Psyr_4950	0.64	-0.8
5,869,013	+		Psyr_4950	0.64	-0.6
5,869,013	+		Psyr_4950	0.64	-0.5
5,869,013	+		Psyr_4950	0.64	-1.6
5,869,013	+		Psyr_4950	0.64	+0.8
5,869,013	+		Psyr_4950	0.64	-0.8
5,869,013	+		Psyr_4950	0.64	-0.3
5,869,013	+		Psyr_4950	0.64	+0.6
5,869,014	-		Psyr_4950	0.64	+0.6
5,869,014	-		Psyr_4950	0.64	-0.3
5,869,014	-		Psyr_4950	0.64	+0.0
5,869,088	+		Psyr_4950	0.67	+0.5
5,869,088	+		Psyr_4950	0.67	-2.0
5,869,089	-		Psyr_4950	0.67	-0.3
5,869,089	-		Psyr_4950	0.67	-0.6
5,869,089	-		Psyr_4950	0.67	-1.7
5,869,089	-		Psyr_4950	0.67	+2.4
5,869,089	-		Psyr_4950	0.67	-0.8
5,869,089	-		Psyr_4950	0.67	+1.3
5,869,089	-		Psyr_4950	0.67	+1.8
5,869,089	-		Psyr_4950	0.67	-0.3
5,869,089	-		Psyr_4950	0.67	+0.2
5,869,089	-		Psyr_4950	0.67	+0.6
5,869,161	+		Psyr_4950	0.71	+0.1
5,869,161	+		Psyr_4950	0.71	-0.1
5,869,161	+		Psyr_4950	0.71	+1.3
5,869,161	+		Psyr_4950	0.71	-0.7
5,869,161	+		Psyr_4950	0.71	+1.5
5,869,161	+		Psyr_4950	0.71	-1.4
5,869,161	+		Psyr_4950	0.71	+0.3
5,869,161	+		Psyr_4950	0.71	+0.9
5,869,161	+		Psyr_4950	0.71	-1.0
5,869,162	-		Psyr_4950	0.71	+0.7
5,869,162	-		Psyr_4950	0.71	-0.8
5,869,162	-		Psyr_4950	0.71	-0.2
5,869,162	-		Psyr_4950	0.71	-0.2
5,869,162	-		Psyr_4950	0.71	+0.0
5,869,162	-		Psyr_4950	0.71	+0.7
5,869,162	-		Psyr_4950	0.71	-0.2
5,869,162	-		Psyr_4950	0.71	+0.9
5,869,162	-		Psyr_4950	0.71	+1.0
5,869,162	-		Psyr_4950	0.71	+2.2
5,869,162	-		Psyr_4950	0.71	-1.6
5,869,162	-		Psyr_4950	0.71	-3.2
5,869,162	-		Psyr_4950	0.71	+1.4
5,869,162	-		Psyr_4950	0.71	-0.6
5,869,162	-		Psyr_4950	0.71	+1.3
5,869,162	-		Psyr_4950	0.71	-0.6
5,869,205	+		Psyr_4950	0.73	-1.1
5,869,519	-		Psyr_4950	0.87	+0.2
5,869,655	+				-2.3
5,869,655	+				-0.0
5,869,771	+				+0.0
5,869,771	+				-0.7
5,869,772	-				-1.0
5,869,772	-				-0.5
5,869,787	+				+0.1
5,869,787	+				+0.6
5,869,811	+				-1.5
5,869,811	+				-1.5
5,869,811	+				-1.2
5,869,935	-		Psyr_4951	0.44	+0.0
5,869,936	+		Psyr_4951	0.44	+0.8
5,869,936	+		Psyr_4951	0.44	+0.5
5,869,936	+		Psyr_4951	0.44	+1.0
5,869,958	+		Psyr_4951	0.51	-0.5
5,869,958	+		Psyr_4951	0.51	-0.1
5,869,959	-		Psyr_4951	0.51	+0.3
5,869,959	-		Psyr_4951	0.51	-0.8
5,869,959	-		Psyr_4951	0.51	+0.0
5,870,071	+		Psyr_4951	0.86	-1.6
5,870,071	+		Psyr_4951	0.86	-3.4
5,870,071	+		Psyr_4951	0.86	-0.3
5,870,071	+		Psyr_4951	0.86	+0.7
5,870,072	-		Psyr_4951	0.87	+0.3
5,870,072	-		Psyr_4951	0.87	-1.9
5,870,076	-		Psyr_4951	0.88	+0.6
5,870,076	-		Psyr_4951	0.88	-0.7
5,870,076	-		Psyr_4951	0.88	+0.3
5,870,076	-		Psyr_4951	0.88	+0.0
5,870,106	+				-0.4
5,870,107	-				-1.7
5,870,107	-				+0.4
5,870,120	+				+1.0
5,870,126	+				-0.8
5,870,154	-				-1.7
5,870,154	-				-1.7
5,870,184	+				+0.4
5,870,184	+				+2.6
5,870,184	+				-1.9
5,870,184	+				-0.3
5,870,184	+				+0.6
5,870,184	+				-1.9
5,870,184	+				+0.6
5,870,184	+				+3.0
5,870,184	+				-1.4
5,870,185	-				+0.6
5,870,185	-				-0.5
5,870,185	-				+0.1
5,870,185	-				+0.6
5,870,190	+				+0.8
5,870,191	-				+3.4
5,870,191	-				-2.8
5,870,195	+				+0.8
5,870,196	-				-0.4
5,870,196	-				-1.2
5,870,267	-				+0.4
5,870,276	-				-1.1
5,870,304	+				+0.8
5,870,332	+				-0.9
5,870,332	+				+2.5
5,870,332	+				+0.3
5,870,332	+				+0.0
5,870,333	-				-1.4
5,870,333	-				-0.3
5,870,333	-				+1.2
5,870,333	-				-1.3
5,870,333	-				-0.3
5,870,333	-				+0.2
5,870,333	-				+1.3
5,870,335	-				-2.1
5,870,493	+				+0.7
5,870,493	+				+0.8
5,870,493	+				-0.4
5,870,493	+				-1.1
5,870,516	-				+2.0
5,870,517	+				-0.8
5,870,517	+				+1.5
5,870,517	+				+2.2
5,870,517	+				-1.1
5,870,518	-				+0.7
5,870,518	-				+0.2
5,870,518	-				+1.1
5,870,518	-				+0.3
5,870,518	-				+1.1
5,870,518	-				+1.2
5,870,518	-				+0.4
5,870,518	-				+1.7
5,870,518	-				+0.6
5,870,518	-				-0.1
5,870,554	+				-1.3
5,870,588	+		Psyr_4952	0.12	-1.3
5,870,588	+		Psyr_4952	0.12	-0.7
5,870,588	+		Psyr_4952	0.12	-1.0
5,870,589	-		Psyr_4952	0.12	-1.7
5,870,589	-		Psyr_4952	0.12	+0.4
5,870,613	+		Psyr_4952	0.15	-0.1
5,870,640	-		Psyr_4952	0.19	-1.2
5,870,640	-		Psyr_4952	0.19	+0.0
5,870,708	+		Psyr_4952	0.28	-0.4
5,870,708	+		Psyr_4952	0.28	-0.7
5,870,709	-		Psyr_4952	0.28	+1.6