Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4922

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
5,834,769	+				+0.8
5,834,770	-				-0.3
5,834,770	-				-0.6
5,834,770	-				-1.8
5,834,857	+				-0.7
5,834,857	+				+0.0
5,834,858	-				+0.5
5,834,858	-				-1.8
5,834,878	+				-0.1
5,834,930	-				+2.9
5,834,930	-				-0.5
5,834,989	+				-1.1
5,834,989	+				+0.5
5,834,989	+				-0.2
5,834,989	+				-0.2
5,834,989	+				-1.0
5,834,989	+				+1.1
5,834,989	+				+0.8
5,834,989	+				+0.9
5,834,990	-				-1.2
5,834,990	-				-2.0
5,834,990	-				+1.3
5,834,990	-				-0.2
5,834,990	-				-0.1
5,834,990	-				-0.1
5,835,036	+				+1.3
5,835,036	+				-0.8
5,835,036	+				-0.3
5,835,036	+				-0.4
5,835,037	-				+0.3
5,835,037	-				+0.0
5,835,106	+				-2.2
5,835,118	+				+1.0
5,835,118	+				+1.0
5,835,118	+				-1.1
5,835,166	+				-0.4
5,835,166	+				-0.6
5,835,167	-				-0.5
5,835,167	-				+3.8
5,835,167	-				-2.8
5,835,167	-				-0.5
5,835,173	+				-0.3
5,835,173	+				+1.6
5,835,174	-				-1.0
5,835,255	+				-0.8
5,835,255	+				+1.4
5,835,255	+				-1.0
5,835,255	+				-0.1
5,835,256	-				+2.0
5,835,256	-				-1.0
5,835,294	+				+1.7
5,835,295	-				-1.0
5,835,295	-				-0.6
5,835,366	+				+0.1
5,835,446	+				+0.2
5,835,446	+				-2.9
5,835,446	+				+1.0
5,835,446	+				-1.8
5,835,446	+				-2.5
5,835,447	-				+0.4
5,835,447	-				-1.1
5,835,447	-				-0.2
5,835,468	-				-0.0
5,835,468	-				-0.5
5,835,536	+				+0.0
5,835,537	-				-0.5
5,835,537	-				-1.4
5,835,537	-				+0.7
5,835,659	+				-0.5
5,835,659	+				-2.1
5,835,659	+				-0.0
5,835,659	+				-0.2
5,835,659	+				+0.9
5,835,659	+				-1.1
5,835,659	+				-0.6
5,835,659	+				-0.7
5,835,659	+				+0.5
5,835,659	+				+0.1
5,835,659	+				-0.4
5,835,659	+				-1.9
5,835,659	+				+0.2
5,835,660	-				-0.2
5,835,660	-				-2.1
5,835,660	-				+0.3
5,835,660	-				+0.3
5,835,660	-				+0.4
5,835,660	-				+1.6
5,835,680	-				+0.4
5,835,680	-				-0.7
5,835,680	-				+0.2
5,835,680	-				+0.2
5,835,712	+				+1.1
5,835,712	+				-3.7
5,835,713	-				+0.8
5,835,756	+				-0.3
5,835,756	+				-1.3
5,835,757	-				-0.4
5,835,757	-				-0.4
5,835,757	-				-1.4
5,835,757	-				+0.5
5,835,769	+		Psyr_4922	0.11	+0.3
5,835,769	+		Psyr_4922	0.11	-0.0
5,835,769	+		Psyr_4922	0.11	+0.5
5,835,769	+		Psyr_4922	0.11	+0.0
5,835,770	-		Psyr_4922	0.11	-1.0
5,835,770	-		Psyr_4922	0.11	-1.7
5,835,770	-		Psyr_4922	0.11	-0.7
5,835,773	+		Psyr_4922	0.12	-0.9
5,835,773	+		Psyr_4922	0.12	+0.3
5,835,773	+		Psyr_4922	0.12	-0.2
5,835,773	+		Psyr_4922	0.12	+0.8
5,835,773	+		Psyr_4922	0.12	+2.6
5,835,773	+		Psyr_4922	0.12	+0.0
5,835,773	+		Psyr_4922	0.12	-0.4
5,835,773	+		Psyr_4922	0.12	-1.7
5,835,773	+		Psyr_4922	0.12	+1.2
5,835,773	+		Psyr_4922	0.12	-0.3
5,835,773	+		Psyr_4922	0.12	+1.3
5,835,773	+		Psyr_4922	0.12	-0.4
5,835,773	+		Psyr_4922	0.12	-2.1
5,835,774	-		Psyr_4922	0.12	+1.6
5,835,774	-		Psyr_4922	0.12	+0.1
5,835,774	-		Psyr_4922	0.12	-0.4
5,835,774	-		Psyr_4922	0.12	-0.5
5,835,774	-		Psyr_4922	0.12	-2.0
5,835,774	-		Psyr_4922	0.12	+0.9
5,835,774	-		Psyr_4922	0.12	-0.1
5,835,774	-		Psyr_4922	0.12	+0.4
5,835,820	+		Psyr_4922	0.18	-1.8
5,835,821	-		Psyr_4922	0.18	+0.1
5,835,821	-		Psyr_4922	0.18	-0.4
5,835,821	-		Psyr_4922	0.18	-3.3
5,835,843	+		Psyr_4922	0.21	+2.5
5,835,857	-		Psyr_4922	0.23	+1.4
5,835,908	+		Psyr_4922	0.30	+0.0
5,835,909	-		Psyr_4922	0.30	-0.4
5,835,909	-		Psyr_4922	0.30	-0.4
5,835,914	+		Psyr_4922	0.31	-0.1
5,835,914	+		Psyr_4922	0.31	+0.7
5,835,914	+		Psyr_4922	0.31	-0.0
5,835,915	-		Psyr_4922	0.31	-1.5
5,835,915	-		Psyr_4922	0.31	+0.3
5,835,937	+		Psyr_4922	0.34	+0.2
5,835,938	-		Psyr_4922	0.34	+0.5
5,835,959	+		Psyr_4922	0.37	-0.5
5,835,959	+		Psyr_4922	0.37	+2.1
5,835,959	+		Psyr_4922	0.37	-1.7
5,835,959	+		Psyr_4922	0.37	+0.3
5,835,959	+		Psyr_4922	0.37	+0.7
5,835,959	+		Psyr_4922	0.37	-0.4
5,835,959	+		Psyr_4922	0.37	+0.0
5,835,960	-		Psyr_4922	0.37	-0.1
5,835,960	-		Psyr_4922	0.37	-0.8
5,835,960	-		Psyr_4922	0.37	+1.0
5,835,960	-		Psyr_4922	0.37	-1.9
5,835,984	+		Psyr_4922	0.40	-0.3
5,835,984	+		Psyr_4922	0.40	-1.7
5,835,984	+		Psyr_4922	0.40	+1.0
5,835,984	+		Psyr_4922	0.40	-0.9
5,835,985	-		Psyr_4922	0.40	+0.0
5,835,985	-		Psyr_4922	0.40	+0.7
5,835,985	-		Psyr_4922	0.40	+1.0
5,836,030	+		Psyr_4922	0.46	-0.8
5,836,030	+		Psyr_4922	0.46	+0.4
5,836,086	+		Psyr_4922	0.54	-1.2
5,836,086	+		Psyr_4922	0.54	-0.7
5,836,087	-		Psyr_4922	0.54	-0.4
5,836,087	-		Psyr_4922	0.54	+0.1
5,836,087	-		Psyr_4922	0.54	-0.7
5,836,087	-		Psyr_4922	0.54	-1.2
5,836,087	-		Psyr_4922	0.54	-1.3
5,836,164	-		Psyr_4922	0.64	-1.0
5,836,288	+		Psyr_4922	0.81	-2.4
5,836,288	+		Psyr_4922	0.81	+1.5
5,836,288	+		Psyr_4922	0.81	-0.4
5,836,289	-		Psyr_4922	0.81	-1.1
5,836,289	-		Psyr_4922	0.81	-0.2
5,836,408	+				+0.3
5,836,408	+				+0.9
5,836,408	+				-1.0
5,836,408	+				+0.5
5,836,421	+				-1.0
5,836,421	+				+0.8
5,836,421	+				+1.6
5,836,422	-				-1.2
5,836,422	-				+0.8
5,836,422	-				-1.9
5,836,434	+				+1.6
5,836,434	+				+0.0
5,836,434	+				-2.0
5,836,434	+				-1.0
5,836,434	+				+3.0
5,836,434	+				-0.9
5,836,434	+				-1.6
5,836,434	+				+0.3
5,836,434	+				-3.4
5,836,434	+				-1.0
5,836,434	+				+1.8
5,836,434	+				+0.2
5,836,434	+				+0.9
5,836,434	+				-2.0
5,836,434	+				-1.0
5,836,435	-				+0.4
5,836,435	-				+2.2
5,836,435	-				+1.1
5,836,435	-				-1.3
5,836,435	-				+0.2
5,836,435	-				-0.8
5,836,435	-				-1.6
5,836,435	-				+0.1
5,836,446	+				-0.3
5,836,446	+				+0.7
5,836,447	-				+1.5
5,836,488	+				+0.3
5,836,488	+				+0.6
5,836,488	+				-0.4
5,836,488	+				+0.3
5,836,488	+				-2.2
5,836,488	+				+0.2
5,836,488	+				+1.2
5,836,488	+				-0.7
5,836,488	+				+0.5
5,836,489	-				-1.1
5,836,489	-				+0.4
5,836,489	-				-1.2
5,836,489	-				+0.2
5,836,489	-				+0.6
5,836,489	-				+1.6
5,836,489	-				-2.0
5,836,489	-				+0.8
5,836,489	-				+0.9
5,836,489	-				+0.1
5,836,492	+				+2.4
5,836,493	-				+0.4
5,836,493	-				+2.6
5,836,493	-				-1.3
5,836,493	-				+0.0
5,836,493	-				+0.9
5,836,493	-				+1.3
5,836,493	-				-1.2
5,836,513	-				+0.3
5,836,513	-				+0.2
5,836,580	-				+1.6
5,836,597	+				+1.6
5,836,598	-				+0.3
5,836,616	+				-0.3
5,836,616	+				-1.2
5,836,616	+				-0.1
5,836,617	-				+2.7
5,836,617	-				-1.0
5,836,617	-				-1.4
5,836,642	+		Psyr_4923	0.10	+0.9
5,836,642	+		Psyr_4923	0.10	-1.8
5,836,643	-		Psyr_4923	0.10	+0.6
5,836,643	-		Psyr_4923	0.10	+2.9
5,836,643	-		Psyr_4923	0.10	-1.3
5,836,643	-		Psyr_4923	0.10	+1.0
5,836,643	-		Psyr_4923	0.10	+0.4
5,836,643	-		Psyr_4923	0.10	-1.7
5,836,643	-		Psyr_4923	0.10	-0.9
5,836,643	-		Psyr_4923	0.10	+0.6
5,836,643	-		Psyr_4923	0.10	+2.1
5,836,643	-		Psyr_4923	0.10	+0.2
5,836,643	-		Psyr_4923	0.10	-0.7
5,836,643	-		Psyr_4923	0.10	+0.5
5,836,648	+		Psyr_4923	0.11	+0.9
5,836,648	+		Psyr_4923	0.11	+0.2
5,836,648	+		Psyr_4923	0.11	+0.7
5,836,648	+		Psyr_4923	0.11	-0.7
5,836,672	-		Psyr_4923	0.13	+1.2
5,836,758	+		Psyr_4923	0.23	-0.0
5,836,761	+		Psyr_4923	0.23	+1.0
5,836,762	-		Psyr_4923	0.23	-1.2
5,836,778	+		Psyr_4923	0.25	-2.2
5,836,906	+		Psyr_4923	0.39	-0.4
5,836,953	+		Psyr_4923	0.45	-1.0
5,836,953	+		Psyr_4923	0.45	-0.2
5,836,964	-		Psyr_4923	0.46	-0.4
5,836,978	+		Psyr_4923	0.47	-1.6
5,836,979	-		Psyr_4923	0.47	-0.4
5,836,994	+		Psyr_4923	0.49	+0.5
5,836,995	-		Psyr_4923	0.49	+0.6
5,837,035	+		Psyr_4923	0.54	-0.1
5,837,035	+		Psyr_4923	0.54	+0.6
5,837,073	+		Psyr_4923	0.58	+1.1
5,837,073	+		Psyr_4923	0.58	+1.0
5,837,074	-		Psyr_4923	0.58	-0.7
5,837,077	+		Psyr_4923	0.58	-0.4
5,837,077	+		Psyr_4923	0.58	+0.7
5,837,078	-		Psyr_4923	0.58	-1.4
5,837,136	+		Psyr_4923	0.65	-0.4
5,837,136	+		Psyr_4923	0.65	-0.3
5,837,136	+		Psyr_4923	0.65	+1.2
5,837,136	+		Psyr_4923	0.65	+2.3
5,837,136	+		Psyr_4923	0.65	-2.2
5,837,136	+		Psyr_4923	0.65	-1.0
5,837,136	+		Psyr_4923	0.65	-1.0
5,837,136	+		Psyr_4923	0.65	+0.6
5,837,136	+		Psyr_4923	0.65	+0.0
5,837,137	-		Psyr_4923	0.65	-0.2
5,837,137	-		Psyr_4923	0.65	-0.9
5,837,137	-		Psyr_4923	0.65	+0.4
5,837,137	-		Psyr_4923	0.65	-1.9
5,837,137	-		Psyr_4923	0.65	+0.5
5,837,137	-		Psyr_4923	0.65	+1.0
5,837,137	-		Psyr_4923	0.65	-0.3
5,837,137	-		Psyr_4923	0.65	+0.1
5,837,137	-		Psyr_4923	0.65	+0.1
5,837,137	-		Psyr_4923	0.65	+1.0
5,837,137	-		Psyr_4923	0.65	-1.2
5,837,137	-		Psyr_4923	0.65	-0.2
5,837,137	-		Psyr_4923	0.65	-3.0
5,837,137	-		Psyr_4923	0.65	-0.3
5,837,137	-		Psyr_4923	0.65	-0.1
5,837,138	+		Psyr_4923	0.65	+0.0
5,837,139	-		Psyr_4923	0.65	+0.5
5,837,139	-		Psyr_4923	0.65	-0.3
5,837,139	-		Psyr_4923	0.65	+0.6
5,837,146	+		Psyr_4923	0.66	+1.0
5,837,147	-		Psyr_4923	0.66	+0.7
5,837,171	+		Psyr_4923	0.69	+0.0
5,837,172	-		Psyr_4923	0.69	+0.0
5,837,227	+		Psyr_4923	0.75	+0.0
5,837,235	+		Psyr_4923	0.76	+1.3
5,837,235	+		Psyr_4923	0.76	-1.2
5,837,236	-		Psyr_4923	0.76	+2.1
5,837,236	-		Psyr_4923	0.76	+0.1
5,837,236	-		Psyr_4923	0.76	-0.7
5,837,236	-		Psyr_4923	0.76	-0.7
5,837,236	-		Psyr_4923	0.76	+0.7
5,837,280	+		Psyr_4923	0.81	-0.4
5,837,328	+		Psyr_4923	0.86	-2.0
5,837,328	+		Psyr_4923	0.86	+0.3
5,837,329	-		Psyr_4923	0.86	-1.5
5,837,329	-		Psyr_4923	0.86	+1.1
5,837,359	+		Psyr_4923	0.89	+1.9
5,837,359	+		Psyr_4923	0.89	-0.7
5,837,359	+		Psyr_4923	0.89	-0.4
5,837,360	-		Psyr_4923	0.90	-2.4
5,837,361	+		Psyr_4923	0.90	-0.5
5,837,361	+		Psyr_4923	0.90	-1.7
5,837,362	-		Psyr_4923	0.90	-0.1
5,837,362	-		Psyr_4923	0.90	+0.1
5,837,362	-		Psyr_4923	0.90	-1.9
5,837,362	-		Psyr_4923	0.90	+0.4
5,837,362	-		Psyr_4923	0.90	+0.2
5,837,362	-		Psyr_4923	0.90	+1.9
5,837,362	-		Psyr_4923	0.90	+0.0
5,837,362	-		Psyr_4923	0.90	+0.9
5,837,362	-		Psyr_4923	0.90	+0.9
5,837,362	-		Psyr_4923	0.90	-1.6
5,837,362	-		Psyr_4923	0.90	+1.1
5,837,362	-		Psyr_4923	0.90	-0.4