Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4903

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
5,815,979	+				+0.5
5,815,979	+				+0.6
5,815,979	+				+0.5
5,815,980	-				-0.8
5,815,980	-				+0.8
5,815,980	-				+0.2
5,815,980	-				-2.4
5,816,015	-				+0.3
5,816,029	-		Psyr_4902	0.10	-0.2
5,816,029	-		Psyr_4902	0.10	-1.5
5,816,190	-		Psyr_4902	0.69	-1.1
5,816,190	-		Psyr_4902	0.69	-1.0
5,816,190	-		Psyr_4902	0.69	-0.4
5,816,190	-		Psyr_4902	0.69	-1.7
5,816,235	+		Psyr_4902	0.86	+0.7
5,816,311	-				-0.4
5,816,594	+				-1.4
5,816,661	+				+0.4
5,816,661	+				-0.0
5,816,661	+				-0.9
5,816,661	+				-1.2
5,816,661	+				-0.7
5,816,661	+				+0.6
5,816,661	+				+0.3
5,816,661	+				+1.7
5,816,661	+				-0.0
5,816,662	-				+0.6
5,816,662	-				-0.4
5,816,662	-				-1.8
5,816,662	-				+0.5
5,816,662	-				+0.6
5,816,663	+				+0.6
5,816,663	+				+2.0
5,816,663	+				-0.5
5,816,663	+				-2.5
5,816,663	+				-0.9
5,816,663	+				-0.7
5,816,663	+				+0.7
5,816,663	+				+1.2
5,816,663	+				+2.1
5,816,663	+				+0.3
5,816,663	+				-1.5
5,816,663	+				-0.9
5,816,663	+				-2.7
5,816,663	+				+1.3
5,816,664	-				-0.9
5,816,664	-				-1.2
5,816,664	-				+1.2
5,816,664	-				+2.3
5,816,664	-				-2.2
5,816,664	-				-0.4
5,816,706	+				-1.4
5,816,744	+				+0.8
5,816,744	+				-2.1
5,816,745	-				+1.3
5,816,745	-				-0.5
5,816,773	+				+1.3
5,816,773	+				+1.8
5,816,773	+				+0.6
5,816,773	+				-1.7
5,816,774	-				-0.6
5,816,774	-				-0.5
5,816,797	-				-0.2
5,816,812	-				+0.8
5,816,876	+				+0.9
5,816,877	-				+0.2
5,816,878	+				-0.1
5,816,878	+				+0.9
5,816,878	+				+1.5
5,816,878	+				+0.3
5,816,878	+				-0.0
5,816,879	-				+0.4
5,816,879	-				-0.7
5,816,879	-				+0.1
5,816,879	-				-0.7
5,816,879	-				+0.8
5,816,894	+				+0.3
5,816,894	+				+0.3
5,816,895	-				-1.6
5,816,964	+				+1.4
5,816,965	-				+0.5
5,816,965	-				-0.4
5,816,965	-				+0.1
5,817,041	+		Psyr_4903	0.12	+2.1
5,817,041	+		Psyr_4903	0.12	+0.4
5,817,089	+		Psyr_4903	0.16	+1.0
5,817,089	+		Psyr_4903	0.16	-1.7
5,817,090	-		Psyr_4903	0.16	+1.1
5,817,090	-		Psyr_4903	0.16	-0.2
5,817,090	-		Psyr_4903	0.16	-0.4
5,817,095	+		Psyr_4903	0.16	-1.9
5,817,148	+		Psyr_4903	0.21	+0.8
5,817,149	-		Psyr_4903	0.21	-1.2
5,817,149	-		Psyr_4903	0.21	+1.8
5,817,149	-		Psyr_4903	0.21	+0.5
5,817,149	-		Psyr_4903	0.21	+0.9
5,817,170	+		Psyr_4903	0.23	+0.2
5,817,171	-		Psyr_4903	0.23	-1.3
5,817,171	-		Psyr_4903	0.23	+2.8
5,817,171	-		Psyr_4903	0.23	+2.0
5,817,171	-		Psyr_4903	0.23	-1.5
5,817,171	-		Psyr_4903	0.23	+0.5
5,817,171	-		Psyr_4903	0.23	-0.8
5,817,183	+		Psyr_4903	0.24	+2.5
5,817,258	+		Psyr_4903	0.31	+1.6
5,817,269	+		Psyr_4903	0.32	+0.7
5,817,269	+		Psyr_4903	0.32	+0.6
5,817,270	-		Psyr_4903	0.32	+1.2
5,817,270	-		Psyr_4903	0.32	+0.3
5,817,289	+		Psyr_4903	0.34	+1.5
5,817,329	+		Psyr_4903	0.37	+0.6
5,817,330	-		Psyr_4903	0.37	+0.6
5,817,330	-		Psyr_4903	0.37	-1.2
5,817,340	-		Psyr_4903	0.38	+1.4
5,817,340	-		Psyr_4903	0.38	+1.6
5,817,420	+		Psyr_4903	0.45	+2.4
5,817,420	+		Psyr_4903	0.45	-0.2
5,817,446	+		Psyr_4903	0.48	+1.0
5,817,447	-		Psyr_4903	0.48	-0.2
5,817,447	-		Psyr_4903	0.48	-0.7
5,817,449	+		Psyr_4903	0.48	-0.3
5,817,450	-		Psyr_4903	0.48	+0.1
5,817,450	-		Psyr_4903	0.48	-2.1
5,817,530	+		Psyr_4903	0.55	-1.7
5,817,530	+		Psyr_4903	0.55	+0.5
5,817,530	+		Psyr_4903	0.55	-0.3
5,817,530	+		Psyr_4903	0.55	+0.0
5,817,530	+		Psyr_4903	0.55	-1.4
5,817,530	+		Psyr_4903	0.55	-2.2
5,817,530	+		Psyr_4903	0.55	+0.6
5,817,530	+		Psyr_4903	0.55	-1.2
5,817,530	+		Psyr_4903	0.55	+0.5
5,817,530	+		Psyr_4903	0.55	+0.9
5,817,530	+		Psyr_4903	0.55	+0.0
5,817,530	+		Psyr_4903	0.55	-1.4
5,817,530	+		Psyr_4903	0.55	-1.4
5,817,530	+		Psyr_4903	0.55	-0.4
5,817,531	-		Psyr_4903	0.55	-2.2
5,817,531	-		Psyr_4903	0.55	-2.4
5,817,531	-		Psyr_4903	0.55	+0.9
5,817,531	-		Psyr_4903	0.55	+0.4
5,817,531	-		Psyr_4903	0.55	+1.6
5,817,531	-		Psyr_4903	0.55	-0.2
5,817,531	-		Psyr_4903	0.55	+0.2
5,817,531	-		Psyr_4903	0.55	-0.1
5,817,531	-		Psyr_4903	0.55	+1.1
5,817,531	-		Psyr_4903	0.55	-0.1
5,817,531	-		Psyr_4903	0.55	+0.1
5,817,531	-		Psyr_4903	0.55	+2.1
5,817,531	-		Psyr_4903	0.55	-0.6
5,817,531	-		Psyr_4903	0.55	+1.5
5,817,531	-		Psyr_4903	0.55	-0.3
5,817,531	-		Psyr_4903	0.55	+2.1
5,817,531	-		Psyr_4903	0.55	-1.3
5,817,642	+		Psyr_4903	0.65	+1.3
5,817,669	+		Psyr_4903	0.68	+2.0
5,817,669	+		Psyr_4903	0.68	+1.7
5,817,669	+		Psyr_4903	0.68	+0.8
5,817,669	+		Psyr_4903	0.68	+0.7
5,817,669	+		Psyr_4903	0.68	+1.0
5,817,670	-		Psyr_4903	0.68	-1.2
5,817,670	-		Psyr_4903	0.68	-0.7
5,817,670	-		Psyr_4903	0.68	+0.9
5,817,680	+		Psyr_4903	0.69	+2.5
5,817,768	-		Psyr_4903	0.76	-1.3
5,817,787	+		Psyr_4903	0.78	+1.7
5,817,788	-		Psyr_4903	0.78	-0.3
5,817,790	+		Psyr_4903	0.78	-0.4
5,817,798	+		Psyr_4903	0.79	+1.6
5,817,798	+		Psyr_4903	0.79	+0.8
5,817,799	-		Psyr_4903	0.79	-0.1
5,817,816	+		Psyr_4903	0.81	-0.6
5,817,816	+		Psyr_4903	0.81	-2.1
5,817,816	+		Psyr_4903	0.81	+1.5
5,817,816	+		Psyr_4903	0.81	-0.5
5,817,816	+		Psyr_4903	0.81	-1.1
5,817,816	+		Psyr_4903	0.81	+1.2
5,817,816	+		Psyr_4903	0.81	-1.9
5,817,816	+		Psyr_4903	0.81	-0.5
5,817,816	+		Psyr_4903	0.81	+0.7
5,817,816	+		Psyr_4903	0.81	+0.9
5,817,817	-		Psyr_4903	0.81	-3.3
5,817,817	-		Psyr_4903	0.81	+0.2
5,817,817	-		Psyr_4903	0.81	-0.6
5,817,817	-		Psyr_4903	0.81	-2.1
5,817,817	-		Psyr_4903	0.81	-0.1
5,817,817	-		Psyr_4903	0.81	-2.2
5,817,820	+		Psyr_4903	0.81	+0.5
5,817,821	-		Psyr_4903	0.81	+0.1
5,817,821	-		Psyr_4903	0.81	+1.5
5,817,826	-		Psyr_4903	0.82	+0.1
5,817,914	+		Psyr_4903	0.89	+0.9
5,817,914	+		Psyr_4903	0.89	-2.1
5,817,914	+		Psyr_4903	0.89	-0.2
5,817,914	+		Psyr_4903	0.89	-2.4
5,817,914	+		Psyr_4903	0.89	+0.2
5,817,915	-		Psyr_4903	0.89	+0.9
5,817,915	-		Psyr_4903	0.89	+0.3
5,817,915	-		Psyr_4903	0.89	-0.6
5,817,915	-		Psyr_4903	0.89	-0.3
5,817,915	-		Psyr_4903	0.89	+0.1
5,817,915	-		Psyr_4903	0.89	+1.6
5,817,925	-				-0.1
5,817,925	-				-0.1
5,817,951	+				-0.9
5,817,993	-				-0.6
5,817,995	+				+0.7
5,817,995	+				-0.2
5,817,995	+				-1.2
5,818,070	+		Psyr_4904	0.11	+1.2
5,818,070	+		Psyr_4904	0.11	+0.3
5,818,071	-		Psyr_4904	0.11	-2.2
5,818,071	-		Psyr_4904	0.11	-0.1
5,818,071	-		Psyr_4904	0.11	-1.9
5,818,105	+		Psyr_4904	0.20	-0.4
5,818,106	-		Psyr_4904	0.21	+0.3
5,818,106	-		Psyr_4904	0.21	+1.6
5,818,106	-		Psyr_4904	0.21	+0.3
5,818,146	+		Psyr_4904	0.31	+0.0
5,818,146	+		Psyr_4904	0.31	+1.1
5,818,147	-		Psyr_4904	0.32	-1.1
5,818,164	-		Psyr_4904	0.36	+0.3
5,818,179	+		Psyr_4904	0.40	+0.2
5,818,180	-		Psyr_4904	0.41	-1.1
5,818,229	+		Psyr_4904	0.54	+2.1
5,818,229	+		Psyr_4904	0.54	+0.3
5,818,389	+				-0.4
5,818,389	+				+0.2
5,818,389	+				-0.1
5,818,389	+				-0.6
5,818,389	+				+2.2
5,818,390	-				-0.9
5,818,390	-				-1.4
5,818,390	-				+1.5
5,818,390	-				-1.1
5,818,390	-				+0.3
5,818,390	-				-0.4
5,818,390	-				-0.5
5,818,390	-				+1.1
5,818,390	-				-0.7
5,818,391	+				+2.8
5,818,391	+				+0.4
5,818,391	+				-1.0
5,818,392	-				+1.8
5,818,392	-				-2.7
5,818,392	-				+1.2
5,818,399	-				-0.1
5,818,403	+				+1.0
5,818,404	-				+1.9
5,818,439	-				+0.9
5,818,439	-				-1.3
5,818,451	+				+0.4
5,818,451	+				-1.7
5,818,451	+				+1.1
5,818,451	+				-2.7
5,818,451	+				+0.4
5,818,451	+				-0.1
5,818,451	+				+1.2
5,818,451	+				-0.5
5,818,451	+				-1.3
5,818,451	+				+1.0
5,818,451	+				-1.4
5,818,451	+				-0.7
5,818,451	+				-1.1
5,818,451	+				+0.9
5,818,451	+				-0.0
5,818,451	+				-1.9
5,818,451	+				+2.5
5,818,451	+				+0.8
5,818,452	-				+1.9
5,818,452	-				-0.6
5,818,452	-				+1.9
5,818,452	-				-1.0
5,818,452	-				+0.7
5,818,452	-				-1.4
5,818,452	-				+0.6
5,818,452	-				+1.6
5,818,452	-				+1.8
5,818,452	-				-2.6
5,818,452	-				+0.7
5,818,452	-				+1.4
5,818,452	-				+2.2
5,818,452	-				+0.2
5,818,452	-				+0.7
5,818,452	-				+0.6
5,818,452	-				+0.4
5,818,452	-				-0.7
5,818,452	-				-0.1
5,818,452	-				-0.3
5,818,452	-				-1.9
5,818,452	-				+0.1
5,818,452	-				+0.0
5,818,452	-				-2.2
5,818,452	-				-0.2
5,818,452	-				+0.9
5,818,452	-				+0.7
5,818,487	+				+1.1
5,818,487	+				-0.8
5,818,487	+				+1.1
5,818,487	+				-0.5
5,818,487	+				-0.2
5,818,487	+				-1.3
5,818,487	+				+0.1
5,818,488	-				+0.0
5,818,488	-				+1.4
5,818,488	-				-0.5
5,818,488	-				-0.5
5,818,491	+				+2.2
5,818,491	+				+0.1
5,818,491	+				+1.8
5,818,491	+				+1.0
5,818,492	-				+2.1
5,818,492	-				+0.2
5,818,492	-				+2.2
5,818,492	-				+0.7
5,818,492	-				-0.4
5,818,640	+		Psyr_4905	0.62	+1.0
5,818,640	+		Psyr_4905	0.62	+0.6
5,818,641	-		Psyr_4905	0.63	+0.3
5,818,641	-		Psyr_4905	0.63	+0.5
5,818,641	-		Psyr_4905	0.63	-2.0
5,818,641	-		Psyr_4905	0.63	-0.4
5,818,660	+		Psyr_4905	0.71	+2.7
5,818,660	+		Psyr_4905	0.71	-0.7
5,818,660	+		Psyr_4905	0.71	-0.6
5,818,660	+		Psyr_4905	0.71	+0.4
5,818,660	+		Psyr_4905	0.71	+1.0
5,818,661	-		Psyr_4905	0.71	-1.4
5,818,661	-		Psyr_4905	0.71	-0.9
5,818,661	-		Psyr_4905	0.71	+0.3
5,818,668	+		Psyr_4905	0.74	-0.1
5,818,668	+		Psyr_4905	0.74	+2.6
5,818,727	+				+0.2
5,818,727	+				+2.0
5,818,727	+				+2.4
5,818,727	+				+0.7
5,818,875	+				-0.2
5,818,876	-				+0.1
5,818,876	-				+1.6
5,818,903	+				+0.0
5,818,904	-				+0.9
5,818,904	-				+0.2
5,818,904	-				+1.2
5,818,940	+				-0.4
5,818,941	-				+0.5
5,818,941	-				+1.1
5,818,941	-				-2.4
5,818,941	-				-2.3
5,818,941	-				+2.1
5,818,941	-				+1.3